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Doubling Down on Known Protein Families
Using a novel computational approach, researchers confirm microbial diversity is wilder than ever. Imagine researchers … of scientists at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … the protein families up by environment and found only 7% of protein families were shared across all eight …
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An Age of CRAGE: Advances in Rapidly Engineering Non-model Bacteria
… that allows researchers to quickly modify diverse bacterial genomes. In 2019, the JGI’s Yasuo Yoshikuni and his team  … of DNA (up to 60 kb) in a single step, directly into the genome. “CRAGE is central to our ability to offer … Mouncey. Using CRAGE, JGI has established a portfolio of microbial hosts that users can select to be engineered. …
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Expanding Virophage Diversity
Virophages are small viruses with double-stranded DNA genomes that co-infect eukaryotic cells along with giant … available metagenomic datasets in JGI’s  Integrated Microbial Genomes & Microbiomes (IMG/M) data suite—which … (for the first time) gut and taxonomically classified into 27 distinct clades (17 of them without previously known …
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10 From JGI on the 2019 Highly Cited Researchers List
Animal Science and Molecular Biology & Genetics categories Microbial Systems research group lead and User Programs … a long-term project to sequence, annotate and analyze the genomes of more than 300 Aspergillus Go here to learn more … of the JGI plant portal Phytozome, which is overseen by 2017 Highly Cited Researcher David Goodstein. Go here to learn …
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Targeted and shotgun metagenomic approaches provide different descriptions of dryland soil microbial communities in a manipulated field study
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Mesophilic and Thermophilic Conditions Select for Unique but Highly Parallel Microbial Communities to Perform Carboxylate Platform Biomass Conversion
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Community ecology across bacteria, archaea and microbial eukaryotes in the sediment and seawater of coastal Puerto Nuevo, Baja California
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Contrasting Community Assembly Forces Drive Microbial Structural and Potential Functional Responses to Precipitation in an Incipient Soil System
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Metagenomic analysis of microbial consortium from natural crude oil that seeps into the marine ecosystem offshore Southern California
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Disentangling the effects of sulfate and other seawater ions on microbial communities and greenhouse gas emissions in a coastal forested wetland
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Microbial Metagenomes Across a Complete Phytoplankton Bloom Cycle: High-Resolution Sampling Every 4 Hours Over 22 Days
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Substrate-restricted methanogenesis and limited volatile organic compound degradation in highly diverse and heterogeneous municipal landfill microbial communities
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