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PCR and Omics Based Techniques to Study the Diversity, Ecology and Biology of Anaerobic Fungi: Insights, Challenges and Opportunities
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SIPs with Standards
… catch: SIP labwork and analysis can be very demanding.  The JGI offers SIP analysis to make these experiments accessible to more researchers. Ultimately, the goal is to generate SIP data … multiple teams and analyses. This episode, Rex Malmstrom (JGI), and Roli Wilhelm (Purdue University), share a few …
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The Megadata of Lake Mendota – Part 3: Boating Out to David Buoy
This is the third and final episode of our series on a giant metagenome assembly from Wisconsin’s Lake Mendota. In the last two episodes, we’ve … on lakewater samples — so this episode is a look at how researchers get these specialized snapshots of a freshwater …
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Sequencing Sphagnum Leads to Discovery of Sex Chromosomes
A nuanced understanding of peat moss drives insight into carbon storage   The Science Boggy peatlands, which hold much of … decompose in peatlands, and so carbon within their tissues doesn’t return to the atmosphere. Peat bogs also serve the … growth rates, decomposition, and carbon sequestration. Researchers wanted to better understand how sphagnum adapts …
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Counting dots or counting reads? Complementary approaches to estimate virus-to-microbe ratios
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Calculating the Costs of Multiple Switchgrass Gene Copies
… at the University of Texas (UT) at Austin, the HudsonAlpha Institute for Biotechnology (HudsonAlpha), and the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility, has discovered …
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Danielle Goudeau
Danielle operates the single-cell genomics pipeline for JGI collaborators. This work combines custom flow cytometric analysis, cell sorting, genome amplification, PCR screening, and 16S sequencing. She also develops …
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XA21-mediated resistance to Xanthomonas oryzae pv. oryzae is dose dependent
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Complete genome sequence of Desulfohalobium retbaense type strain (HR100T)
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Omega: an Overlap-graph de novo Assembler for Metagenomics
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Extreme Scale De Novo Metagenome Assembly
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Fungal & Algal Program User Advisory Committee
… is chartered to render advice, guidance, and counsel on the effective management and strategic objectives of the … and scientific relevance and quality. The Committee does not perform management functions nor does it direct the Programs’ management teams on how to …
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