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Complete genome sequence of Nitrosomonas sp. Is79, an ammonia oxidizing bacterium adapted to low ammonium concentrations
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Low Mutation Rate and Atypical Mutation Spectrum in Prasinoderma coloniale: Insights From an Early Diverging Green Lineage
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Engagement Webinar: Harnessing JGI’s Metabolomics Capabilities
… Webinar held November 5, 2020 (watch the  video below, captions are available) spotlighted the metabolomic analysis … Q: Can you give us an idea about the scale of an average study? How many samples are typically involved? How long … Data Analysis – Tips from Users page.  Q:  Is the metabolic study able to build a profile for a not very well studied …
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From Competition to Cooperation
… Tracking evolution of symbiotic lifestyles across multiple fungal lineages. … able to carry out a broader analysis than had ever been done before to look at how multiple forest fungi have … (Berkeley Lab). All of the fungal genomes used in the study are available on the JGI fungal portal  MycoCosm . The …
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Calculating the Costs of Multiple Switchgrass Gene Copies
… at the University of Texas (UT) at Austin, the HudsonAlpha Institute for Biotechnology (HudsonAlpha), and the … outline the questions they asked – and answered – in the study that recently appeared in the Proceedings of the … ecological and evolutionary consequences. A previous study conducted by our research team surveying the genomic …
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Researching and Solving Real-World Problems with the 2023 JGI-UC Merced Interns
… Program was brimming with excitement and determination as they came onsite. From data carpentry to science … Emerald Nash and mentor Jonelle Basso, Experimental Study of Root Colonization by Resident Phages of a Plant … able to talk to people that are working at the lab, my coworkers and I also wanted to know what it’s like to work …
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Better Genome Editing for Bioenergy
… technology to enable improvements in microbial oil production. The Science CRISPR-Cas9 is a powerful, high-throughput … help scientists engineer organisms for bioenergy applications. Cas9 needs guide RNA to lead it to the correct sequence … I will spend the first four sharpening the axe.” In this study,  published in  Metabolic Engineering , a team of …
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Characterizing Communities: JGI Announces Latest CSP Portfolio
… proposals have been accepted from 70 full submissions based on 92 letters of intent. Additionally, 40 percent … call. Richard Dick of The Ohio State University aims to study plant drought resilience in the Sahel, an arid region … by allowing the generation of preliminary data for a larger study.” …
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Trent Northen
… programs using mass spectrometry for energy and environmental research, including through the Joint BioEnergy … available to JGI users.  Dr. Northen’s research is focused on using metabolomics to link genomes with environments to understand how webs of microbes cycle carbon and …
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Corymbia Genome Expands Terpene Synthesis Knowledge
… Genome annotations of two C. citriodora subspecies broaden understanding of … subspecies variegata genomes allowed researchers to study the conservation and evolution of the genes … part in biotic and abiotic stress responses. Overall, this study improves our understanding of the terpene synthase …
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New Research Finds Flagella in the Terrestrial Roots of Marine Bacteria
… other forms of  Chloroflexota that adapted to marine environments hundreds of millions of years ago.  The Impact … chemicals not typically found in oceans or soils.  A recent study published in  The ISME Journal     focused on a class … nitrogen, and break down organic and inorganic compounds. Studying their diverse metabolic capabilities offer insights …
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When “The Blob” Made It Hotter Under the Water
… marine heatwave event may foreshadow climate change impact on marine microbial communities. The Science A team of … ocean known as “The Blob.” The event was recorded during a long-term study of microbial communities in the northeastern subarctic … performed under the auspices of the Scientific Committee on Oceanographic Research (SCOR), the US Department of …
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