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A Powerful Technique to Study Microbes, Now Easier
… with JGI scientists on an ambitious project: to bring in robots to help process experiments that measure microbial … researchers and robots have made these experiments easier for scientists everywhere. …
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JGI on the 2021 Highly Cited Researchers List
… JGI! They are among those recognized by Clarivate Analytics for demonstrating “significant influence in their chosen field or fields … Nikos Kyrpides Dan Rokhsar Simon Roux Jeremy Schmutz Susannah Tringe Tanja Woyke Below are a few projects each of …
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From Sample Shipments to Sequences – A Tour of the JGI’s Sequencing Pipeline
… the world. Most of those researchers send their samples in from afar, without ever hearing much about the sequencing lab. So today, Chris Daum walks through the JGI’s …
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SIPs with Standards
… Stable Isotope Probing (SIP) is a powerful technique for studying microbial … -- more reproducible, more reusable, and more insightful, for the future of studying microbial communities.   …
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The Megadata of Lake Mendota - Part 1: Many, Many Mers
… Lake Mendota sits right next to the University of Wisconsin, Madison. And Trina McMahon's lab has been sampling the microbes of that lake for over 20 years, to understand how the freshwater …
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The Megadata of Lake Mendota - Part 2: Souped Up Computing
… is the story of a giant metagenome assembly from Wisconsin’s Lake Mendota. In this episode: a look at the supercomputing that stitches … capable of running smaller assemblies — so we head there for a sense of what this supercomputing looks like. …
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JGI@25: Stories from Intern Alumni
… anniversary . Over the next few months, we’ll be revisiting a number of notable achievements that showcase our … challenges. Over the past 25 years, the JGI has hosted interns from a number of universities and organizations. … and virtual projects, hear intern alumni Candace Cole, Alessandro Favognano, Brenda Yu, Mario Banuelos, Jackie Shay, …
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What Happens To a Rainforest When You Dial Up Drought?
… Rainforests store a big fraction of all the carbon on Earth, and soil microbes play a key role in pulling that carbon out of the atmosphere. This episode, … take a look at what happens to that storage when a rainforest hits a drought. Tag along with their experiments in a …
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JGI announces 2024 New Investigator portfolio
… The JGI is eager to work and share our tools with a widening circle of researchers. That’s why each year we look for novel research projects — aligned with DOE missions and … find a list of researchers whose proposals were accepted for 2024. Harnessing the JGI’s  resources, these researchers …
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JGI Hosts GPU Hackathon in May
… WHEN: May 6-10, 2019 WHERE: JGI With DOE investments in graphical processing unit (GPU)-based high-performance computing resources, an upcoming hackathon led by … JGI hackathon is particularly focused on developing bioinformatics applications instead of on simulation codes. “JGI …
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JGIota: A Tool to Find the Nomadic Genes that Help Microbes Adapt - geNomad
… Camargo and Simon Roux, a few of the JGI researchers behind software that finds plasmids and viruses within microbial genomes. As mobile genetic elements like …
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Evolution of a Fungal Gene Expression Regulator
… Describing the largest analysis to date of the modified DNA base … ways to protect poplar and other crops being considered for bioenergy feedstock development. Summary With the aim of producing at least one reference genome for every family of fungi, the 1000 Fungal Genomes …
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