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The Megadata of Lake Mendota - Part 1: Many, Many Mers
… Madison. And Trina McMahon's lab has been sampling the microbes of that lake for over 20 years, to understand how … to analyze 500 metagenomes, it was the biggest project the JGI had ever put together.  The next 3 episodes are the …
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The Mobilome in the Mire
… light, and opening up new options for engineering these microbes in the future. Join Sarah Bagby (Case Western Reserve University) and Simon Roux (JGI) as they talk about their recent work on a time series …
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Taking Stock of the Known and Unknown Microbial Space
… the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … Wu, a member of the Functional Annotation team within the JGI’s Microbiome Data Science group. “Turns out that despite … art of hands-on microbiology and experimental validation.  Microbes run the world, playing key roles in regulating …
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User Executive Committee
… The UEC represents the JGI user community and is responsible for providing input and advice on JGI policies and practices that affect users and their …
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Project Management Office
… The JGI Project Management Office carries out a number of … to facilitate world-class science. PMO works with users, JGI scientists and technical staff to onboard users and …
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Refining the Process of Identifying Algae Biotechnology Candidates
… the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … (NREL), and Los Alamos National Laboratory, combined expertise at the National Labs to screen, characterize, … The Scenedesmus genome was sequenced and assembled at the JGI. Sara Calhoun in Igor Grigoriev’s team at the JGI led …
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Enlarging Windows into Understanding Gene Functions
… JGI innovates protocol revealing how genetic variations in … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … an article published November 25, 2021 in Nature Methods , JGI researchers led by co-first authors Leo Baumgart and …
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Webinar: MycoCosm Tutorial
… Learn more about JGI’s  MycoCosm data portal , an interactive collection of … that we have a sister portal PhycoCosm ( https://phycocosm.jgi.doe.gov ) to explore algae and other eukaryotes, where we have the Oomycetes node ( https://phycocosm.jgi.doe.gov/oomycota ) on PhycoCosm tree with several …
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Tour the IGB
… zoom in and out. 1st floor 2nd floor 3rd and 4th Floors The JGI mural on the 3rd floor whimsically references dozens of iconic JGI contributions to advancing the frontiers of …
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Analyze Data
… The JGI supports the entire data life cycle — from experimental … research community.   We have two key priorities:  The JGI is involved in efforts to integrate data in support of …
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Offerings & Capabilities
… The central mission of the JGI’s Genomic Technologies department is   ensuring users … amenable to statistical analysis. To meet these needs, the JGI deploys state-of-the-art sequencers and platforms …
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The Power of One, Amplified
… between the analyzed community members. The Impact Though microbes help regulate the planet’s nutrient cycles and are … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … was performed by Danielle Goudeau and Rex Malmstrom of the JGI’s Microscale Applications group . Cells were randomly …
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