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Digging into Microbial Ecosystems Deep Underground
… “Microbes underpin so much of what we see on earth in terms of nutrient cycles and … these systems.” -Mike Wilkins, Colorado State University GI users and microbiome researchers Mike Wilkins and his … deep underground, and before the pandemic, they took the JGI on a sampling field trip. One of the questions they’re …
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Climate Change Threatens Base of Polar Oceans’ Bountiful Food Webs
… give rise to some of the largest food webs on Earth. And at their base are microscopic, photosynthetic algae. But … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … of Energy Joint Genome Institute, a DOE Office of Science User Facility  located at Lawrence Berkeley National …
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Taking Stock of the Known and Unknown Microbial Space
… Metagenomic datasets could help map out microbial diversity hotspots Over … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … of Energy Joint Genome Institute, a DOE Office of Science User Facility located at Lawrence Berkeley National …
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John Vogel
… Dr. Vogel joined JGI in 2014 to establish a plant functional genomics … Prior to this, he served as a Research Molecular Biologist at the USDA for 12 years where he was a driving force behind the development of numerous genomic resources that fostered the widespread adoption of Brachypodium …
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Data Discovery Tool Helps Identify Microbial Roles within Metagenomes
… Protein annotations provide insights into environmental tendencies The … mSystems paper , a team at the DOE Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … ( https://ror.org/04xm1d337 ), a DOE Office of Science User Facility, is supported by the Office of Science of the …
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Annotation of metagenome short reads using proxygenes
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Transcriptional control of Clostridium autoethanogenum using CRISPRi
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Mining Metagenomes for Cas Proteins
… Cas14 proteins discovered from JGI’s IMG/M database and biochemically characterized at UC … (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility. The sequences were then … of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the …
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Cold adaptive traits revealed by comparative genomic analysis of the eurypsychrophile Rhodococcus sp. JG3 isolated from high elevation McMurdo Dry Valley permafrost, Antarctica
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Data shopping in an open marketplace: Introducing the Ontogrator web application for marking up data using ontologies and browsing using facets
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Doubling Down on Known Protein Families
… Using a novel computational approach, researchers confirm microbial diversity is … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … of Energy Joint Genome Institute, a DOE Office of Science User Facility  located at Lawrence Berkeley National …
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Meeting Code of Conduct
… All participants and staff of JGI events are required to adhere to the following Code of … event is to build a stronger community. Our goal is to create an environment where everyone feels welcome to participate, speak up, ask questions, and engage in conversation. …
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