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The Fast Changing Landscape of Sequencing Technologies and Their Impact on Microbial Genome Assemblies and Annotation
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Metagenomes and Metagenome-Assembled Genomes from Microbial Communities Fermenting Ultrafiltered Milk Permeate
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Eelgrass Proves to Be Much Younger Than We Thought
… its history. Their research, published in  August 2023 in  Nature Plants , was able to assess absolute time estimates … able to spread quickly and establish itself in a variety of new environments.  This all started roughly 250,000 years … event, doubling all of its chromosomes.  Over time, the new and old chromosome copies begin to diverge and mutate …
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Sequencing Sphagnum Leads to Discovery of Sex Chromosomes
… to energy, are made up heavily of sphagnum mosses.  New research identifies sex chromosomes in the plant and … National Laboratory, and the HudsonAlpha Institute for Biotechnology sequenced sphagnum  genomes from plants selected by a team from Duke University, …
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SPRUCE-ing Up Science
A former JGI intern is now applying his internship lessons on … of biology and computer science, to reveal clues about how microbial and bacteria communities influence the … mediate Sphagnum peatmoss resilience to warming . New Phytol. 2022 Jun;234(6):2111-2125. doi: …
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Giant Bacteria Found in Guadeloupe Mangroves Challenge Traditional Concepts
DNA floats freely within the cytoplasm of their cells. This newly discovered species of bacteria keeps its DNA more … in coastal sediments,” said Woyke, who also heads the JGI’s Microbial Program and is one of the article’s senior … level. They amplified, sequenced and assembled the genomes. In parallel, Gros’ lab also used a labeling …
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Better Genome Editing for Bioenergy
… part of CRISPR-Cas9 technology to enable improvements in microbial oil production. The Science CRISPR-Cas9 is a … and xylose — into fatty acids that could be used for renewable fuel. In fact, lipids can make up more than 90 … Foundation Graduate Research Fellowship Program ( DGE-1110007 ). SA, AB, and MB were supported by NSF  1706134 . SL …
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JGIota: A Tool to Find the Nomadic Genes that Help Microbes Adapt - geNomad
… snippet on Antonio Camargo and Simon Roux, a few of the JGI researchers behind software that finds plasmids and viruses within microbial genomes. As mobile genetic elements like viruses spread …
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Microbial ecology of an Antarctic hypersaline lake: genomic assessment of ecophysiology among dominant haloarchaea
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Viral dark matter and virus–host interactions resolved from publicly available microbial genomes
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MetaBAT, an efficient tool for accurately reconstructing single genomes from complex microbial communities
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Genomic insights into redox-driven microbial processes for carbon decomposition in thawing Arctic soils and permafrost.
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