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Mining Public Databases Yields Largest Map of Fungal Mitochondrial Genomes to Date
… By leveraging new tools and large-scale data mining, JGI researchers nearly tripled the available fungal … for AI-driven studies of energy metabolism. The Science Researchers produced nearly 10,000 new annotations of fungal … for fungal genome data.   The Impact This dataset gives researchers a new foundation for studying how fungi produce …
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Streamlining Regulon Identification in Bacteria
… can be turned on or off by the same regulatory protein. Researchers demonstrated the efficacy and potential of … and unscalable. To test the efficacy of RIViT-seq, researchers recently characterized 12 sigma factors and were … 17 , 2022, was conducted by JGI Director Nigel Mouncey and research scientist Hiroshi Otani. Both are members of the …
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How Filamentous Fungi Sense Food
… model fungus  Neurospora crassa . The Science A team led by researchers at the University of California, Berkeley used a … present in plant biomass. This is of interest for bioenergy researchers looking to improve the industrial production of … Berkeley and her postdoctoral fellow Vincent Wu worked with researchers at the U.S. Department of Energy (DOE) Joint …
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Webinar: PhycoCosm Tutorial
… comparison to other funding agencies. The JGI doesn’t fund research; we provide the resources for free. 8.  Q: What … DOE’s Office of Science is the largest supporter of basic research in the physical sciences in the United States, and …
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How Maize Makes An Antibiotic Cocktail
… entailing the function of more than a dozen enzymes. But researchers have now revealed that just a handful of enzymes … giving scientists a bigger bang for their buck. The research team reports that transferring just four genes … to identify genes associated with zealexin synthesis. The researchers used proteomics to home in on precise …
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DAP-seq Drives Robust Mapping of Gene Regulation
… As  published online in  Nature Plants  on July 15, researchers have developed multiplexed assays — experimental … by these approaches creates a vast resource offering researchers the ability to chart regulatory networks across … DNA, eliminating the need for living cells. This allowed researchers to map regulatory “switches” in species beyond …
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Better Genome Editing for Bioenergy
… To ensure the gene editing tool will make the right cut, researchers created a set of guide RNAs that were effective … study,  published in  Metabolic Engineering , a team of researchers likewise honed their tool before felling their research problem: at a genetic level, how does  Y. …
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Silver age of GOLD introduces new features
… entities,  further outlined in the journal  Nucleic Acids Research in November 2022.  One of GOLD’s strengths has been … of Energy operated [DE-AC02-05CH11231]; National Energy Research Scientific Computing Center, which is supported by …
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For the Tiniest Archaea, A Genomic Switch of Friend or Foe
… provides new views of these relationships.  Recently , researchers used population genomics to find that while … However, no microbe works alone. Archaea, bacteria, and viruses all operate in concert to form the foundation of this deep Earth ecosystem. For example, when certain viruses attack, their archaeal hosts release organic carbon. …
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An Earth Month Look at Sustainability Efforts at the JGI
… DOE’s Office of Science is the largest supporter of basic research in the physical sciences in the United States, and …
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Engagement Webinar: How to Successfully Apply for a CSP Proposal
… Science Program (CSP) Applications Webinar inviting researchers to submit white papers to the CSP  New … is a free, open source analytics platform provided to the research community by DOE. Email [email protected] if you have … DOE’s Office of Science is the largest supporter of basic research in the physical sciences in the United States, and …
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JGI Announces 2025 New Investigator Portfolio
… Yong Zhang and Zhiping Zhong. (All images courtesy of the researchers) Each year, the JGI searches for novel research projects from PIs who have not led any previously … us to work and share our tools with a widening circle of researchers whose work aligns with DOE missions .  Below …
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