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High-quality PacBio draft genome sequences of 17 free-living Bradyrhizobium and four related Nitrobacteraceae strains isolated from arid soils in the Santa Catalina Mountains of Southern Arizona
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Exploring Possibilities: 2022 JGI-UC Merced Interns
… challenges they overcame, and what new skill sets they look forward to taking back to school.  The interns from this … it just showed me when people have a goal and passion for it, it’s possible to do amazing things. And it made me … And also specifically, it sparked my interest in bioformatics, so that’s what I’m gonna take with me to the …
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Len Pennacchio
… his Ph.D in 1998 from the Department of Genetics at Stanford University where he uncovered the genetic cause of a rare form of human epilepsy and subsequently generated one of the first mouse models for this common neurological disorder. In 1999, he was named …
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High quality draft genome sequence of Flavobacterium rivuli type strain WB 3.3-2T (DSM 21788T), a valuable source of polysaccharide decomposing enzymes
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Supercomputing, MetaHipMer and the Mega Dataset of Lake Mendota
… 25-plus years since the JGI’s inception, making it possible for researchers to get a close look at more ecosystems and organisms than ever before. In 2006, the JGI produced 33 billion base pairs of … They may also provide a basic understanding of the roles microbiomes play in determining the behavior of the physical …
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Discovery and ecogenomic context of a global Caldiserica-related phylum active in thawing permafrost, Candidatus Cryosericota phylum nov., Ca. Cryosericia class nov., Ca. Cryosericales ord. nov., Ca. Cryosericaceae fam. nov., comprising the four species
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Cultivating Symbiotic Antarctic Microbes
… of an obligate symbiont—entirely dependent on the other for required nutrients—is genome size. The obligate … the Rauer 1 and Club lakes in East Antarctica and enriched for native microbes. Metagenomes from enrichment cultures … cultured. The researchers then pursued the Nha-C strain for further study, tagging the cells with individual …
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Better Living Through Bioenergy
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DAP-seq Drives Robust Mapping of Gene Regulation
… advancement holds the potential to expand opportunities for bioenergy and bioengineering applications. “We worked … Berkeley National Laboratory. “These proteins’ binding preferences are very, very stable over long evolutionary … TFs and fragmented genomic DNA, eliminating the need for living cells. This allowed researchers to map regulatory …
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Calculating the Costs of Multiple Switchgrass Gene Copies
… of Texas (UT) at Austin, the HudsonAlpha Institute for Biotechnology (HudsonAlpha), and the U.S. Department of … natural sampling and field experiments due to its potential for habitat restoration and as a feedstock for biomass-based biofuel production. As seen with many …
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JGI Announces 2023 Community Science Program Awardees
… to the proposers of the 19 proposals selected for the 2023 Community Science Program call of the U.S. … questions relevant to the DOE mission, and we look forward to facilitating their success. “ The CSP Annual Call … about our proposals, including how to apply, here on our website. The approved proposals start October 1, 2022. See …
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The Genome of the Acid Soil-Adapted Strain Rhizobium favelukesii OR191 Encodes Determinants for Effective Symbiotic Interaction With Both an Inverted Repeat Lacking Clade and a Phaseoloid Legume Host
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