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2022 Progress Report
… Pictured is a timelapse of the Integrative Genomics Building (IGB) seen above is home to the DOE Joint Genome Institute (JGI). Researchers from the DOE Systems …
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Webinar: PhycoCosm Tutorial
… Learn more about JGI’s  PhycoCosm data portal , an interactive collection of sequenced algal genomes, omics … your Tree ever differ from NCBI Taxonomy? A(nswer): If you find that our trees are incorrect or need to be changed, please contact us and we’ll work work it out 2.  Q(uestion): Do you publish the data sets the trees are …
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Webinar: SIP technologies at EMSL and JGI
… Molecular Sciences Laboratory (EMSL) and the Joint Genome Institute (JGI) provide access to a variety of tools that … least a microgram of DNA in the tube so you’d need at least 2 micrograms in the sample to start with. 2. Q: What would a … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility …
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An Earth Month Look at Sustainability Efforts at the JGI
… Sustainable Berkeley Lab maintains a  calendar of Earth Month events throughout April. … program manager for  Sustainable Berkeley Lab (SBL). By 2030, Berkeley Lab  aims to cut its greenhouse gas emissions … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility …
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Plotting a Model for Virus-Host Warfare Deep Below Ground
…   Visualizing a novel, candidate viral genome found in the deep … yet abundant subsurface organisms was  recently reported in Nature Communications. The work was co-led by Victoria … do so, they compared samples collected from an aquifer in 2012 and 2018 against a biofilm sample collected in 2018. …
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Ancient Algae Reveal Secrets of Plant Evolution
… land over 600 million years ago. The Science By studying the genes of land plants’ closest algal relative,  … three strains of  Zygnema circumcarinatum . Published  May 2024 in  Nature Genetics by an international research consortium led … as part of a startup grant of the University of Nebraska Lincoln, the Research & Artistry Award of Northern Illinois …
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Accelerating Metagenomics Discoveries with Deep Learning
… Berkeley National Laboratory (Berkeley Lab) and other institutions shared their works-in-progress with 86 participants in an online workshop to … algorithms, inspired by communication networks found in nature, allows machines to “learn” features. State of the …
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Iron-rich Microbial Mats’ Main Players: Marsarchaeota
… Novel archaeal lineage found in Yellowstone may have been important in early … at Yellowstone, and in this latest report, published in Nature Microbiology , he and his team describe a candidate … with JGI’s help. Additionally, the Marsarchaeota comprise 20-50 percent of the iron-oxide microbial mat communities in …
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An Addiction Crucial to a Fungus’ Reproduction
… bacteria to regulate key components of its reproductive machinery The Science To better understand how beneficial … JGI team sequenced and annotated a host genome (Rm ATCC 52813) as part of the 1000 Fungal Genomes project. As reported in the November 29, 2017 issue of Nature Communications , the team found that the fungus is …
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Viruses Reprogram Cells into Different Virocells
… Microbial cells infected by viruses undergo metabolic reprogramming. The … cells as virocells, a change in name first described in 2011 which reflects the metabolic changes they’ve undergone. … As part of efforts to characterize global microbial diversity with an aim to improve predictive ecosystems …
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Building Sphagnum Genomic Resources
… Sphagnome data would enable researchers’ insights on their potential carbon cycling impact.   The … matter, and researchers estimate that they hold about 25 percent of the world’s soil carbon. In high latitudes, … ecological and evolutionary genomics .” Understanding the nature and genetic basis of functional traits in sphagnum …
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Marine Microbe Contains Multitudes
… A deep dive into microbial genomics reveals one bacterial species is … with different lifestyles. The Science The bacterium SAR324 is unusually cosmopolitan. In the ocean’s North Pacific … related 16S rRNA genes, but these genes mask the striking diversity of their genomic capabilities. According to Boeuf, …
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