Results

Persistent memory as an effective alternative to random access memory in metagenome assembly
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NMPFamsDB: a database of novel protein families from microbial metagenomes and metatranscriptomes
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IMG/PR: a database of plasmids from genomes and metagenomes with rich annotations and metadata
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Individual genome assembly from complex community short-read metagenomic datasets
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Katherine Louie
… where she manages metabolomics production for community sequencing projects and heads R&D efforts to expand the metabolomics capabilities and product offerings for JGI users.  Using cutting-edge mass … Sci Rep. 2013;3: 1656. … Education … Selected Publications …
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Identification of beneficial and detrimental bacteria impacting sorghum responses to drought using multi-scale and multi-system microbiome comparisons
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Water aging and the quality of organic carbon sources drive niche partitioning of the active bathypelagic prokaryotic microbiome
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Metagenomics-resolved genomics provides novel insights into chitin turnover, metabolic specialization, and niche partitioning in the octocoral microbiome
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Designer DNA: JGI Helps Users Blaze New Biosynthetic Pathways
A special issue of Synthetic Biology celebrates research enabled by the JGI … Program , the JGI enables large-scale synthesis support, sequencing, integrative -omics, and data mining, empowering … more than 10 papers, including two Nature Plants publications, in five years, have come out of the …
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Dealing with Drought: Uncovering Sorghum’s Secrets
Over 40 percent of the cereal crop’s genes respond to drought stress. The … and Extension Center (KARE) in Parlier, Calif. They grew two sorghum cultivars under three watering conditions, and … nearly 400 root and leaf samples and helped analyze the sequencing datasets. The results from the first year showed …
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Functional characteristics of an endophyte community colonizing rice roots as revealed by metagenomic analysis.
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A metagenomic insight into freshwater methane-utilizing communities and evidence for cooperation between the Methylococcaceae and the Methylophilaceae
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