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Accelerating Metagenomics Discoveries with Deep Learning
… insights from metagenomic data. In deep learning, a branch of machine learning, data is passed through algorithms … biologist at the US Department of Energy (DOE) Joint Genome Institute (JGI), presented on generating vector … that low sequence identity may belie. The technology he’s using is magical; transform any length of amino acid …
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Genomes of ubiquitous marine and hypersaline Hydrogenovibrio, Thiomicrorhabdus and Thiomicrospira spp. encode a diversity of mechanisms to sustain chemolithoautotrophy in heterogeneous environments
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High Throughput Phosphoglycolate Phosphatase Activity Assay Using Crude Leaf Extract and Recombinant Enzyme to Determine Kinetic Parameters Km and Vmax Using a Microplate Reader
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For the Tiniest Archaea, A Genomic Switch of Friend or Foe
… The Science Within the archaeal domain, there is a group of tiny hitchhikers. These organisms are abundant and yet … . Huberiarchaeum. Both organisms are part of the DPANN superphylum of Archaea. This pair is abundant in two subsurface … confirm the microorganisms had a close relationship. Then, using metagenomes and metatranscriptomes generated by the …
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Webinar: PhycoCosm Tutorial
… JGI’s  PhycoCosm data portal , an interactive collection of sequenced algal genomes, omics data and comparative analysis tools. … on, there are 7 genomes on NCBI but your portal has only 2 of them. A: Watch the video (above) for the answer provided … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science …
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Genome Sequence of Thermofilum pendens Reveals an Exceptional Loss of Biosynthetic Pathways without Genome Reduction▿ †
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Genome Calligrapher: A Web Tool for Refactoring Bacterial Genome Sequences for de Novo DNA Synthesis
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Gut Fungi: Unexpected Source of Novel Chemicals
… The Science Anaerobic fungi, which die in the presence of oxygen, dwell in herbivore guts and help them digest … source of antibiotics. Indeed, these anaerobic fungi may be using these compounds for self-defense. But the compounds … fungi synthesize molecules that are sources of new chemical diversity; the team identified what looked to be three …
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Biotech Partners Summer Intern Co-Authors NAR Paper
… Kaushal Sharma, one of five Antioch High School rising juniors who participated in internships at the DOE Joint Genome Institute this summer through the Biotech Partners … program is now an author on a Nucleic Acids Research publication. The paper describes the version 6 data updates …
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User Advisory Committees
… All staff members of the US Department of Energy (DOE) Joint Genome Institute (JGI) commit to … users and their science including technical capabilities offered, proposal review procedures and the annual meeting. … The DNA Synthesis Science Advisory Committee is chartered to offer advice, guidance and counsel on the effective …
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Rationale for reconsidering current regulations restricting use of hybrids in orange juice
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Generation of Long Insert Pairs Using a Cre-LoxP Inverse PCR Approach
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