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… three new members earlier this month – Sneha Couvilion of Pacific Northwest National Laboratory, Chris Schadt of … of the University of California, Santa Barbara. They join eight other JGI users already serving on the UEC – go … is an Assistant Professor in the Department of Ecology, Evolution and Marine Biology at UCSB, where she leads a …

Collaboratory encourages user engagement. The Science In addition to the core set of "primary metabolites"—chemical compounds shared by most … more than 13 million BGCs in the catalog at the time of publication, it is the largest repository of BGC sequence …

The Science Anaerobic fungi, which die in the presence of oxygen, dwell in herbivore guts and help them digest their last leafy meal. In their evolutionary history, these fungi branched off early from … fungal natural products, O’Malley and her team plan to use genetic tools to boost production and isolate the compounds. …

… how microbes can colonize plant roots, focusing on genetic components required for effective colonization. In … (scRNA-seq, Spatial Transcriptomics). … University of California, San Diego (PhD, 2011) Rensselaer Polytechnic … of Cell Identity as an R package … Education … Selected Publications … Software …

… is a single-celled alga with a unique place in evolutionary history. Retaining ancestral features of both … sequences have been cited in almost one-fourth (23.8%) of publications focused on that specific algae. The reference … lab and second author on the paper, studied viral genetics and gene therapy before self-training himself as a …

… 2023 marked a decade since the inception of the flagship internship program … values which are integral to what I do on a daily basis. Two of the most relevant are service and respect, and …

Neri is a computational biologist who spends his days wrangling viral genomes and occasionally remembering to document … just "spicy messenger RNA", and that somewhere in the mess of genetic sequences lurks the next cool virus – if only our …

… 2020 collaborative FICUS projects. Through the Facilities Integrating Collaborations for User Science (FICUS) program, two Department of Energy (DOE) Office of Science national user … assessing the distribution of genome-derived functional traits through the soil profile and their relationships with …

… focused on building tools to facilitate expert curation of human gene models in support of JGI’s contributions to … 72, 411. Gordon et al., 2020.  Gradual polyploid genome evolution revealed by pan-genomic analysis of Brachypodium … plant genomics.      Nucleic Acids Research 40, D1178. Publications … Scientific Advisory Board member, InterMine …

A quick snippet on Antonio Camargo and Simon Roux, a few of the JGI researchers behind software that finds plasmids and viruses within microbial genomes. As mobile genetic elements like viruses spread their DNA, they can …