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Uncovering the dominant role of root metabolism in shaping rhizosphere metabolome under drought in tropical rainforest plants
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An Age of CRAGE: Advances in Rapidly Engineering Non-model Bacteria
… A group led by JGI scientists have made strides in improving and applying a method that allows researchers to quickly … addition to the synthetic biologist’s toolkit: a technique for  c hassis (or strain)-independent  r ecombinase- a … can be used to create compounds more efficiently than one strain could on its own.  In work published in  …
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Taking Stock of the Known and Unknown Microbial Space
… microbial diversity hotspots Over the past few decades, advancements in sequencing technologies have led to an … the microbial diversity we know about, and proposes a path forward to curate and cultivate what is still unknown.  “We … it comes to isolate genome data, our real-world touchstones, we’re just scratching the proverbial Petri dish,” …
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DOE Metrics
…     2,164     Q4 2026 175     2,208     *Includes Illumina and PacBio sequencing platforms. **Operating Hours target is based on 98% of the total … or plant genomes. [Download PDF] End-of-year Goal – Develop one new computationally enabled approach to analyze complex …
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Training the Next Generation of Talent
… (DOE JGI), a DOE Office of Science user facility, Keedrian Olmstead was back on campus at the University of California, Merced to start orientation as a first-year graduate … cancer research. Lawrence’s project had him developing a framework that would allow users to simultaneously run …
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JGI@25: Expanding Metagenomics to Capture Viral Diversity
… In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable … challenges, characterizing viruses is a key step. For decades, though, many viruses have been somewhat … in the environment — their sheer genetic diversity. As pioneers of this field, the JGI has leveraged metagenomics to …
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JGI Workshop at SIMB NP Meeting
… Jan. 7: New Capabilities to Study Secondary Metabolism   … logics to be understood, accessing these untapped metabolic capabilities is often tedious and resource intensive. This is often due to, for example, tight regulation of biosynthetic gene clusters …
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Crysten Blaby-Haas
… Materials Initiative, a partnership between JGI and the Molecular Foundry, a nanoscale research and knowledge-based user facility at … joint user capability between the JGI and Molecular Foundry for genome-encoded biomaterial discovery, design, and … PhD, Microbiology and Cell Science, University of Florida NIH Postdoctoral …
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A One-Stop Shop for Analyzing Algal Genomes
… The PhycoCosm data portal allows anyone to freely investigate the genes of more than 100 algae. … Understanding the genetic underpinnings responsible for these traits takes us closer to harnessing algae for …
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Genome and proteome analyses show the gaseous alkane degrader Desulfosarcina sp. strain BuS5 as an extreme metabolic specialist
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Metabolic Potential for Reductive Acetogenesis and a Novel Energy-Converting [NiFe] Hydrogenase in Bathyarchaeia From Termite Guts – A Genome-Centric Analysis
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Expanding standards in viromics: in silico evaluation of dsDNA viral genome identification, classification, and auxiliary metabolic gene curation
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