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Accelerating Metagenomics Discoveries with Deep Learning
… from Lawrence Berkeley National Laboratory (Berkeley Lab) and other institutions shared their works-in-progress with 86 participants in an online workshop to harness deep learning for metagenomic data.  Metagenomic data, or DNA sequencing … Lawrence Berkeley National Laboratory, is committed to advancing genomics in support of DOE missions related to clean …
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Engagement Webinar: How to Successfully Apply for a CSP Proposal
… On September 1, JGI held a JGI Engagement: Pro Tips for Successful Community Science Program (CSP) Applications … Carefully read our proposal call description and ensure your idea is aligned Discuss your proposal idea … key points about JGI’s capabilities, technical feasibility, and relevance to the DOE’s mission.  Have someone proofread …
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Polar Phytoplankton Need Zinc to Cope with the Cold
… Antarctic algae need their vitamins; zinc fuels some of their most important functions. Even in the chilly waters of Antarctica, tiny … other oceans. That zinc turns out to be extremely important for polar phytoplankton.  After peering into the function … Lawrence Berkeley National Laboratory, is committed to advancing genomics in support of DOE missions related to clean …
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Learning to Look
… Machine learning approach significantly expands inovirus diversity. To answer the question, “Where’s Waldo?” readers need to look for a number of distinguishing features. Several characters … Lawrence Berkeley National Laboratory, is committed to advancing genomics in support of DOE missions related to clean …
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Panel Discussion: Launching & Sustaining Startups in Synthetic Biology
… Synthetic Biology Who’s Invited? All Berkeley Lab Employees and Affiliates. When: August 29th, 3:00 pm – 5:30 pm 3:00 pm – 4:15 pm: Panel discussion, Q&A followed by: 4:15 pm – 5:30 pm: Hosted … from the panel discussion  here . Contact  Robin Johnston for followup questions.     …
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Mindfully Moving JGI
… Walnut Creek, after countless generations of sequencing platforms (up to 120 sequencing machines at maximum) maintained by a workforce that numbered more than 100 at its peak, all the machines were switched off. Over the next two weeks, they were crated, shipped to, and then installed at the  Integrative Genomics Building , …
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Tracking the Origins of Methane-Producing Microbes
… Mini-Metagenomics Approach Helps Identify Novel Archaeal Methane Metabolism. Methane-producing archaea are estimated to produce 500 million … cycle. All methanogenic archaea use one of three pathways for methanogenesis: hydrogen-dependent and CO2-reducing, or …
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Green Algae Reveal One mRNA Encodes Many Proteins
… – in two species of green algae, Chlamydomonas reinhardtii and Chromochloris zofingiensis . “I was scrutinizing the genes of one of our species of algae and kept seeing what looked like mistakes by the gene … research team included scientists at the University of California (UC), Berkeley, UCLA, UC Davis, Brookhaven National …
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2021 JGI Proposal Call Brings New Investigators into Community Science Program
… Accepted proposals emphasize JGI interests in algae and secondary metabolites. A total of 27 proposals have been  approved through the annual  Community Science Program (CSP) call of the U.S. … 80 full proposals, resulting from 95 letters of intent. For the first time, 63 percent of the accepted proposals …
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The JGI Data Portal: Improving User Experience
… The human-centered, agile collaboration between the JGI and the information technology company Truss has resulted in the JGI … Lawrence Berkeley National Laboratory, is committed to advancing genomics in support of DOE missions related to clean … characterization and cleanup. The JGI provides integrated high-throughput sequencing and computational …
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Engagement Webinar: Utilizing long-read sequencing for metagenomics and DNA modification detection
… long-read DNA sequences to aid with genome assembly and transcriptome analysis of microbial, fungal, and plant … Input & sequencing Q(uestion): How much DNA is needed for “regular” vs the ultra-low input library creation … Lawrence Berkeley National Laboratory, is committed to advancing genomics in support of DOE missions related to clean …
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Promoting the Power of Viral Metagenomics
… An article summarizing the field of viral metagenomics, … authored by JGI researchers Lee Call,  Stephen Nayfach and  Nikos Kyrpides , was  recently published in the … Since early 2020, people all over the world have been forced to confront the awesome power that viruses have to …
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