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Supercharging SIP in the Fungal Hyphosphere
HT-SIP is a capability available to request through  the JGI proposal calls . … Work at Lawrence Livermore National …
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Plotting a Model for Virus-Host Warfare Deep Below Ground
… the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … by the Alfred P. Sloan foundation (grant number G-2017-9955), the Ministry of Culture and Science of North … of the German Science Foundation (grant number DFG PR1603/2-1). The authors acknowledge sampling logistics …
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The Megadata of Lake Mendota - Part 2: Souped Up Computing
Perlmutter that works at large scale. But nearby the JGI, a cluster called Dori is also capable of running …
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Dealing with Drought: Uncovering Sorghum’s Secrets
… and the U.S. Department of Energy Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … For that reason, its genome was sequenced by the JGI in 2009 and it is considered to be a Flagship Plant. By uncovering … the crop and its microbiome. For three consecutive years (2016-2018), researchers conducted large-scale experiments in …
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Complete genome sequence of the thermophilic, hydrogen-oxidizing Bacillus tusciae type strain (T2T) and reclassification in the new genus, Kyrpidia gen. nov. as Kyrpidia tusciae comb. nov. and emendation of the family Alicyclobacillaceae da Costa and
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MycoCosm Tutorial
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How to Target a Microbial Needle within a Community Haystack
… the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … Development of this protocol was enabled by the JGI’s  Emerging Technologies Opportunity Program . The ETOP … develop technology that can then be made available to JGI users in order to address pressing energy and …
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From Stress to Growth: The adaptive mechanisms of algae in changing Arctic waters
… the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … ( The annotated algal genome is available on the JGI’s PhycoCosm data portal.) This research not only sheds … of Canada-Compute Canada facilities. The work (10.46936/10.25585/60001017) conducted by the U.S. Department of …
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For the Tiniest Archaea, A Genomic Switch of Friend or Foe
… the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … from their own genomes. One of these systems, the CRISPR-Cas9 system, is a powerful tool in gene editing, but many other … to J.F.B.). The work ( proposal doi: 10.46936/10.25585/60000800 ) conducted by the U.S. Department of …
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An Enzyme Family that Helped Shape Nitrogen Metabolism on Our Planet
… approaches to look at how this enzyme family evolved across 90 species. “One unique thing about this work was our focus … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … for computational analysis of the AT enzyme family, the JGI provided DNA synthesis capabilities to enable functional …
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Crops as Tough as World Cup Turf
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An Automated Tool for Assessing Virus Data Quality
… uncultivated viruses. Following up on those guidelines, JGI researchers have now developed CheckV (pronounced … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … This work was also supported the grant #2016/23218-0 from São Paulo Research Foundation (FAPESP). …
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