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… an internship program to bring students to the JGI for research training experience. Enabled by the DOE … Watson and graduate student LaMonika Dent worked with JGI mentors Yi Zhai and John Vogel on researching the effects of Brachypodium distachyon plant root exudates on the plant …

… The Science Considered the world’s most harvested crop by tonnage, sugarcane accounts for 80% of global sugar … The Impact In providing a reference sugarcane  genome , the JGI provides foundational genetic information that crop … partly enabled by the JGI’s Community Science Program; in 2018, a monoploid reference sequence of sugarcane …

… Leveraging massive comparative genomics to decode millions of mystery genes and lay a future-ready foundation     Over … with the Department of Energy (DOE) Joint Genome Institute (JGI)’s Fungal and Algal Science Program and JGI users have … and yeasts, outnumber their ancient relatives by nearly 10 to one in sequenced collections. Yet the early-diverging …

… Understanding the shared genetic toolkit of ancestral and present-day plants The Science In a recent  … paper , researchers focused on the full composition of genes, or pangenome, of the model plant  Marchantia … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …

… New Graduate Internship Program Builds Bridges Between DOE JGI, UC Merced Days after presenting the results of his summer research at the U.S. Department of Energy … Arabidopsis microbiome, particularly, how bacteria can be driven toward compounds produced by the plant roots. He is …

… This webinar focused on how the JGI employs single-molecule, long-read DNA sequences to aid with genome assembly and transcriptome analysis of microbial, fungal, and plant research projects.  More … for PacBio? A(nswer):  Regular PacBio typically requires ~ 1.5-10 ㎍. Low-input protocols are continuously improved, but …

… to expression, scientists can now opt for various shades of grey. The ability to fine-tune the level of gene … systems, expanding the technologies available for other JGI users outside the realm of bioenergy optimization. … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …

… “learn” features. State of the art algorithms can perform astonishing degrees of feature recognition: for example, a … the US Department of Energy (DOE) Joint Genome Institute (JGI), presented on generating vector representations of … is part of the JGI Genome R&D Group and is one of more than 100 scientists and systems engineers involved in …

… In the summer of 2015, Adam Session was a postdoc working at the DOE Joint … Nowadays, Session is an Assistant Professor at Binghamton University in New York. He and Rokhsar have  recently … Session and Rokhsar, building on work with former JGI postdoc Jarrod Chapman, developed a method to correctly …

… . The Science Most species are diploids and have two sets of chromosomes, one from each parent. In contrast, many … polyploid sugarcane genome now underway as part of the JGI Community Science Program (CSP), a critical factor in … modern sugarcane cultivars are hybrids, each with more than 100 chromosomes; assembling a sugarcane genome is incredibly …

… ActinoBase offers a public portal of insight into special groups of … largest genus within Actinobacteria and therefore a cornerstone of ActinoBase,  a public platform built on the … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility, as well as a …

… a single protein. Recently reported in the Proceedings of the National Academy of Sciences , a team of researchers … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … (FICUS) collaborative science initiative between the JGI and EMSL.  …