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… on developing new bioinformatics solutions to support JGI in adopting new genomics technologies, scaling up genomics analysis to peta-bases, and enabling data-driven science. This is a group of computational biologists, bioinformaticians, computer …

This series is the story of a giant metagenome assembly from Wisconsin’s Lake … — Summit and Frontier — that process terabytes of data with MetaHipMer2. And the National Energy Research … Perlmutter that works at large scale. But nearby the JGI, a cluster called Dori is also capable of running …

… user engagement. The Science In addition to the core set of "primary metabolites"—chemical compounds shared by most … public database for the research community. With more than 13 million BGCs in the catalog at the time of publication, … The U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …

A preview of how large-scale single cell genomics complements … In these springs, temperatures can reach as high as 80°C (~190°F), yet microbes thrive here. The communities in this … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …

… (metagenomes). However, the quality and completeness of metagenome-assembled virus sequences vary widely. In a … uncultivated viruses. Following up on those guidelines, JGI researchers have now developed CheckV (pronounced … Additionally, CheckV was able to identify just over 17,000 contiguous sequences (contigs) of proviruses flanked …

… the US Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility. Grigoriev and … Instead, the partners stubbornly maintained complete autonomy; they can be isolated and grown separately from each … work was supported by an intramural seed grant (IGSP 2008001) to DA, FL, and FD from the Duke Institute of Genomic …

… (scRNA-seq, Spatial Transcriptomics). … University of California, San Diego (PhD, 2011) Rensselaer Polytechnic Institute (B.S., 2006) … List of …

The Science Within the archaeal domain, there is a group of tiny hitchhikers. These organisms are abundant and yet … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … Allen Frontiers Group, the National Science Foundation (MCB-1244557 to J.A.D.) and the Lawrence Berkeley National …

Miscanthus  sequence offers insights into benefits of polyploidy and … Biosciences Institute, the DOE Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … and Environmental Research under Award Number DE-SC0018420. The work conducted by the U.S. Department of Energy …

Miscanthus  sequence offers insights into benefits of polyploidy and … Biosciences Institute, the DOE Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … and Environmental Research under Award Number DE-SC0018420. The work conducted by the U.S. Department of Energy …

… a microbial mat. The Science In microbial mats, communities of microorganisms live among viruses that infect them. But … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … the virus had been infecting the cell. The team assembled 130 genomes from their sample — a small proportion of the …

A collaborative team led by researchers at the University of Texas (UT) at Austin, the HudsonAlpha Institute for … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility, has discovered … (in this case, a plant’s complete genetic makeup) and 10 common gardens. We discovered that 8X populations have …