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ALE: a generic assembly likelihood evaluation framework for assessing the accuracy of genome and metagenome assemblies
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JGI Scientists Pen Genome Watch Articles
… more to come in 2020. Researchers at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office … published January 27, is about engineering plants and their microbiomes for more sustainable agriculture and was written … so far selected the authors of these pieces to represent diversity in research area, gender, as well as stage of …
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Mapping the Earth’s Hidden Fungal Kingdom
… Leveraging massive comparative genomics to decode millions of mystery genes and lay a future-ready foundation     Over … into an estimated 2–6 million species — dwarfing the diversity of plants. To put this evolutionary timescale in … completely unsampled. This creates a bottleneck: Without genetic blueprints from diverse fungi, researchers struggle …
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Tanja Woyke Elected to American Academy of Microbiology
… Tanja Woyke , who has been elected to the American Academy of Microbiology (AAM) ! She is among the 68 new Fellows in … developing and harnessing single-cell methods to access the genetic material of uncultivated microbes and link their … space grew from 123,000 to over 900,000 proteins, and virus diversity in this group expanded 10-fold, offering the …
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Common Ancestry and Novel Genetic Traits of Francisella novicida-Like Isolates from North America and Australia as Revealed by Comparative Genomic Analyses
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The INSIG2 rs7566605 genetic variant does not play a major role in obesity in a sample of 24,722 individuals from four cohorts
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How to Target a Microbial Needle within a Community Haystack
… A workflow for capturing the genetic make-up of specific uncultivated microbes from complex environmental … be sequenced. Their protocol,  detailed in the journal  Microbiome , combines multiple techniques and was … The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science …
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JGI@25: Strengthening Soybean
… In honor of the JGI's 25th anniversary in 2022, we have revisited a … energy independence in the U.S. Not only does it pair with maize, the dominant source of bioethanol, in crop rotation, … “All along the way, it was just like rediscovering genetics, with the evolution of sequencing technologies and …
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Marine Microbe Contains Multitudes
… microbial genomics reveals one bacterial species is made of four ecologically distinct groups with different … many varied environments? Now, a recent study published in Microbiome has uncovered that SAR324 encompasses four … related 16S rRNA genes, but these genes mask the striking diversity of their genomic capabilities. According to Boeuf, …
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Diverse ecophysiological adaptations of subsurface Thaumarchaeota in floodplain sediments revealed through genome-resolved metagenomics
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Serpentinization-Influenced Groundwater Harbors Extremely Low Diversity Microbial Communities Adapted to High pH
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Metagenomic Insights into the Uncultured Diversity and Physiology of Microbes in Four Hypersaline Soda Lake Brines
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