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Prokaryotic community profiles at different operational stages of a Greek solar saltern
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Individual genome assembly from complex community short-read metagenomic datasets
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Conversion of Amazon rainforest to agriculture alters community traits of methane‐cycling organisms
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Potential for functional divergence in ectomycorrhizal fungal communities across a precipitation gradient
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BONCAT-FACS-Seq reveals the active fraction of a biocrust community undergoing a wet-up event
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Peatland Fungal Community Responses to Nutrient Enrichment: A Story Beyond Nitrogen
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Conserved unique peptide patterns (CUPP) online platform 2.0: implementation of +1000 JGI fungal genomes.
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JGI Plant Gene Atlas: an updateable transcriptome resource to improve functional gene descriptions across the plant kingdom
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Simon Roux Named 2025 ASM Microbiome Data Prize Awardee
… for Microbiology (ASM). Roux leads the Viral Genomics group within the JGI Metagenome Program, and coordinates the … and management best practices that have advanced the microbial sciences. The Prize also recognizes innovative and … year in Berkeley, Calif. Convening the “viral ecogenomics” community, the VEGA symposium provides networking …
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Nikos Kyrpides
… the development of the comparative analysis platforms for microbial genomes and metagenomes (IMG). He became the Metagenomics Program head in 2010 and has the combined Microbial Genomes and Metagenomes Program since 2011. Prior … 2021. A global metagenomic map of urban microbiomes and antimicrobial resistance. Cell . 8674:00585-7. Nayfach S et al. …
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Bacteria and Fungi Divvy Up the Work in Forest Floor
… in a temperate forest filled with Norway spruce trees, and microbial activity teems beneath your feet. Both bacteria … UniProt, exist, are not specific enough for a microbial community like that from a temperate coniferous forest floor … Baldrian’s team distinguished four specific habitats within the forest floor: the leaf litter on top of the soil, …
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Simon Roux
… Dr. Roux joined the JGI in 2017 to lead viral genomics research as part of the … users for analyzing viral datasets, and the organization of community-building efforts in the field of viral … knowledge of viral diversity and virus-host interactions in microbial systems. Through a 2021 DOE Early Career Research …
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