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Olpidium, The Key to the Origin of Terrestrial Fungi
… obscure fungi of Chytridiomycota (the “chytrids”).  A collaborative team led by Joey Spatafora at Oregon State … et al . In both studies, however, Olpidium was unexpectedly grouped with non-flagellated terrestrial fungi, but not with … pressure on retaining the flagellum in the terrestrial ecosystems. Unfortunately, neither paper was able to resolve …
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Enlarging Windows into Understanding Gene Functions
Science User Facility located at Lawrence Berkeley National Laboratory (Berkeley Lab). And one of the tools that … all the sites where transcription factors bind quickly and efficiently in the genome by adding tagged transcription … sequencing and computational analysis that enable systems-based scientific approaches to these challenges.  …
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The genome of Polaromonas naphthalenivorans strain CJ2, isolated from coal tar‐contaminated sediment, reveals physiological and metabolic versatility and evolution through extensive horizontal gene transfer
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The Megadata of Lake Mendota - Part 1: Many, Many Mers
… the University of Wisconsin, Madison. And Trina McMahon's lab has been sampling the microbes of that lake for over 20 years, to understand how the freshwater ecosystem works.  So a few years ago, when they set out to …
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JGI@25: Stories from Intern Alumni
… a number of notable achievements that showcase our collaborations and capabilities to enable great science that … universities and organizations. From field research and wet lab experiments, to computational modeling and virtual …
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What Happens To a Rainforest When You Dial Up Drought?
… with their experiments in a fully enclosed, human-made ecosystem: Biosphere 2.      …
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Crops as Tough as World Cup Turf
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Introducing New Members of the JGI User Executive Committee
… analyzed use-restricted data without contacting the lab that generated that data,” he said in his candidate … Pawlowska, who studies fungal-bacterial symbiotic systems, noted that she would like to help advance JGI …
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Forming Scientific Connections and Building Community
… research is very sentimental to me.” Mentors: Crysten Blaby-Haas & Bikash Shrestha Project: “ Detecting Isotope … Project: “ Development of a multiplex genomic integration system for the selection of genes essential for specialized … a part of a dynamic and innovative environment where collaboration and research discovery are at the forefront.” …
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Simon Roux Named 2025 ASM Microbiome Data Prize Awardee
… for Microbiology (ASM). Roux leads the Viral Genomics group within the JGI Metagenome Program, and coordinates the … and plasmid workflows for the National Microbiome Data Collaborative.  This award recognizes distinguished research … diversity, understand the role of viruses in natural ecosystems, and functionally explore viral genetic diversity.  …
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Dealing with Drought: Uncovering Sorghum’s Secrets
P­­lant Gene Expression Center, Pacific Northwest National Laboratory, and the U.S. Department of Energy Joint Genome … Science User Facility located at Lawrence Berkeley National Laboratory (Berkeley Lab). The Impact Half a billion people consider sorghum a …
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The Expanding Universe of Methane Metabolisms in Archaea
… a DOE Office of Science User Facility, for publicly available metagenome data provided by the other study … that “Washburn Hot Springs is a highly-reduced, suboxic system that may be analogous to environments found on early … sequencing and computational analysis that enable systems-based scientific approaches to these challenges.  …
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