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Programs & Platform Leads
As an Integrative Genome Science User Facility, the JGI plays a leadership role in enabling the frontiers of research related to DOE’s missions in bioenergy, carbon cycling and …
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Marchantia Pangenome Highlights Adaptive Nature of Plant Lineages
Understanding the shared genetic toolkit of ancestral and present-day plants The Science In a recent  Nature Genetics paper , researchers focused on the full composition of genes, or pangenome, of the … , a project supported by the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science …
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Accelerating Metagenomics Discoveries with Deep Learning
… insights from metagenomic data. In deep learning, a branch of machine learning, data is passed through algorithms … a computational biologist at the US Department of Energy (DOE) Joint Genome Institute (JGI), presented on generating … exists for proteins. (And while Mash and BBsketch can be used on nucleotide sequences, they’re not as reliable on …
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Complete genome sequence of the plant-associated Serratia plymuthica strain AS13
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Work With the JGI! Tips for a Winning CSP Proposal
Science Program gives researchers access to all kinds of sequencing, ‘omics and bioinformatics capabilities — and … free. We accept new projects related to energy and the environment several times a year. A few proposal calls have … this episode, hear proposal tips from Tanja Woyke, who runs user programs at the JGI, and project manager Miranda …
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Tracing the Evolution of Shiitake Mushrooms
New genomes highlight the diversity of white rot fungi in the genus Lentinula   The Science … samples, this study also tracks the enzymes these fungi use to break down wood, and compares genetic diversity … Science Program (CSP) at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science …
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Getting to the Bottom of Fungal Functions Across Earth’s Forests
… registers the sound — one thing is for sure: there are lots of fungi around. Within a forest’s soil, hundreds of species … soil RNA to fungal genomes.  The U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National …
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JGI on the 2021 Highly Cited Researchers List
… in their chosen field or fields through the publication of multiple highly cited papers during the last decade.” … with switchgrass biology. The information could be useful toward the DOE’s interest in harnessing the crop toward producing …
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From Berkeley to Binghamton: Tracking Strawberry Evolution
In the summer of 2015, Adam Session was a postdoc working at the DOE Joint Genome Institute with Dan Rokhsar, who also holds … the genetic codes of plants is often challenging because in many plants chromosomes are present in more than two …
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Hiroshi Otani
Since joining the DOE Joint Genome Institute in 2016, Dr. Otani has been … particularly actinomycetes. His research activity is focused on developing and implementing new technologies and methodologies that facilitate discovery of new secondary metabolites. Prior to joining the JGI, he …
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Green Algae Reveal One mRNA Encodes Many Proteins
… a single protein. Recently reported in the Proceedings of the National Academy of Sciences , a team of researchers … National Laboratory, the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Berkeley Lab and the Environmental …
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De novo transcriptome assembly of drought tolerant CAM plants, Agave deserti and Agave tequilana
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