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Cultivating Symbiotic Antarctic Microbes
… in environmental processes (related to interactions of soil-sediment environments, water and air-atmosphere with … interactions. Using metagenomes recovered directly from environmental samples and cultivated microbes, … region in the SPEARE proteins appears to be involved in DNA degradation, and these proteins may be directly involved …
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JGI announces 2024 New Investigator portfolio
… for novel research projects — aligned with DOE missions and from PIs who have not led any previously-accepted proposals … to the metabolic savviness of microbial ecosystems at the forest floor and along ocean shores. Their results could …
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Promoting the Power of Viral Metagenomics
… and  Nikos Kyrpides , was  recently published in the journal  Annual Review of Biomedical Data Science . The … best ways to study such viruses is by sequencing the bulk DNA or RNA contained in a sample that has been collected from any kind of environment you can think of – animal …
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Draft Genome of Janthinobacterium sp. RA13 Isolated from Lake Washington Sediment
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Finding the Fermenters
… recently compiled a list of with more than 8,300 organisms from multiple sources, including the U.S. Department of … ruminant guts, sediments, and anaerobic bioreactors. Aside from producing energy that the organisms can use to thrive, … Fermentation Explorer ( GitHub ) with a series of large datasets. One test was to predict traits of more than 400 …
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2021 JGI Proposal Call Brings New Investigators into Community Science Program
… Laboratory (Berkeley Lab). The accepted proposals come from 80 full proposals, resulting from 95 letters of intent. For the first time, 63 percent of the accepted proposals come from investigators who have not previously been a principal …
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Lost in translation: What we have learned from attributes that do not translate from Arabidopsis to other plants
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The Power of One, Amplified
… single cell genomics by collecting nearly 500 single cells from a single low diversity hot spring sediment sample. … microbial populations. The work appeared in The ISME Journal . Members of the Dunfield lab collected samples from … Program, led the genomic analyses to compare the resulting datasets, emphasizing the utility of single cell sequencing …
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Phytozome: Tutorial Workshop from 2022 CROPS Conference @HudsonAlpha
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A toolkit for microbial community editing
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Microorganisms thriving together as communities
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Assessment of the Deepwater Horizon oil spill impact on Gulf coast microbial communities
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