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Engagement Webinar: How to Apply for Resources at Multiple DOE User Facilities
… On February 17, 2021, JGI and the Environmental Molecular Sciences Laboratory … Accessing Resources at Multiple DOE User Facilities with a Single Proposal webinar, inviting researchers to … Who can apply for this proposal call? A(nswer): We work with people from all around the world. We work with …
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Supercharging SIP in the Fungal Hyphosphere
… a commonly-used process for studying microbial communities, with results published in the  November 2022 issue … the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility at Lawrence Berkeley … HT-SIP is a capability available to request through  the JGI proposal calls . …
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The Power of One, Amplified
… cells harbored mobile genetic elements that were missed within paired metagenome assembled genomes (MAGs), and that … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley … the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported under Contract …
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A Grass Model to Help Improve Giant Miscanthus
… Department of Energy (DOE) Bioenergy Research Center, along with researchers from the Energy Biosciences Institute, the DOE Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley … which is supported by the U.S. Department of Energy, Office of Science, Office of Biological and Environmental …
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iPHoP: A Matchmaker for Phages and their Hosts
… these hosts are microbes like bacteria, not humans. With metagenomic sequencing, researchers have found more of … evaluates multiple predictions to reliably match viruses with their archaea and bacteria hosts. The Impact Within the … the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility at Lawrence Berkeley …
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In Hot Spring Microbial Mat, Viruses Ride “Piggyback”
… inside the host’s genome, living quietly and replicating with their host indefinitely. Now, in studying a microbial … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley … the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported under Contract …
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Accelerating Metagenomics Discoveries with Deep Learning
… Lab) and other institutions shared their works-in-progress with 86 participants in an online workshop to harness deep … the US Department of Energy (DOE) Joint Genome Institute (JGI), presented on generating vector representations of … to become much simpler; instead of aligning sequences with popular, but computationally costly approaches such as …
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A Mentor’s Perspective on Training the Next Generation
… Over the years, hundreds of interns have come to the JGI from all parts of the globe to gain lab experience and contribute to ongoing projects. In one way or another, they’ve all mentioned how invaluable their time at the JGI was and how great it was to have an experienced career …
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Katherine Louie
… Dr. Louie joined the JGI in 2014 to develop the metabolomics program, and in 2019 … manages metabolomics production for community sequencing projects and heads R&D efforts to expand the metabolomics … over 10k samples/year, Dr. Louie and her team work with other JGI scientists in development of new, advanced …
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New Research Sheds Light on Diversity in the Deep Sea
… seeps through cracks in the Earth’s crust and reacts with very hot rocks below, becoming an extremely hot, … the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility at Lawrence Berkeley … the communities studied. The datasets are available on the JGI’s  Integrated Microbial Genomes & Microbiomes (IMG/M) …
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Rex Malmstrom
… of the Microscale Applications group. Before joining the JGI in 2010, he made the first ever measurements of in situ … in situ functional activities of specific microbial groups within complex communities.  The Microscale Applications … also carries out custom preparative work for difficult user projects, including those that require fluorescence …
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An Enzyme Family that Helped Shape Nitrogen Metabolism on Our Planet
… National Laboratory (Berkeley Lab). He completed this work with collaborators at the University of Wisconsin-Madison as … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Berkeley Lab. In …
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