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JGI@25: The Little Alga That Could
… production in other algae that may be more viable for sustainable biofuel production. The JGI published a partial … been cited in almost one-fourth (23.8%) of publications focused on that specific algae. The reference genome is cited in roughly 10% of all since-released publications on green algae. “The …
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Green Algae Reveal One mRNA Encodes Many Proteins
… messenger RNA, which encodes a single protein. Recently reported in the Proceedings of the National Academy of Sciences , a team of researchers has found numerous examples of polycistronic expression – in which two or … (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Berkeley Lab and the Environmental …
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Graduate Students Get Thesis Research Opportunity at the JGI
… at one of the DOE national laboratories or national user facilities. As a result of the latest call , a total of … were selected to carry out part of their thesis research at 12 host national laboratories or facilities between 3-12 … UC Merced School of Natural Sciences. “I’m deeply concerned about climate change and this is a remarkable opportunity to …
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High quality draft genome sequence of Flavobacterium rivuli type strain WB 3.3-2T (DSM 21788T), a valuable source of polysaccharide decomposing enzymes
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JGI@25: Stories from Intern Alumni
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Introducing New Members of the JGI User Executive Committee
The JGI welcomes three new members to their User Executive Committee (UEC) – Jack Gilbert, Ashley Shade, and Jason Stajich! They join six other JGI users already serving on the UEC – go here to view the full … community outreach efforts with diversity, equity and inclusion in mind. Microbiome ecologist Shade became Director of …
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Complete genome sequence of Granulicella tundricola type strain MP5ACTX9T, an Acidobacteria from tundra soil
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Complete genome sequence of Granulicella mallensis type strain MP5ACTX8T, an acidobacterium from tundra soil
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The molecular dimension of microbial species: 3. Comparative genomics of Synechococcus strains with different light responses and in situ diel transcription patterns of associated putative ecotypes in the Mushroom Spring microbial mat
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iPHoP: A Matchmaker for Phages and their Hosts
…   To understand virus-host dynamics, computation helps fill in what cultivation can’t. The Science At first, viruses are merely toolkits. To do anything, they must find a … these different routes. To train the model, the team used 1,870 known virus-host pairs to generate a matrix of data …
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An Integrated Dataset to Understand Ecosystem Interaction
… time. By collecting data from 27 different poplar ( Populus trichocarpa ) trees, as well as the soil surrounding … wildlife habitats and water-quality regulation. Focusing on the rhizosphere and interactions between the trees, … Laboratory (Berkeley Lab). All of this information — 318 metagenomes, 98 plant transcriptomes and 314 metabolomic …
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Polar Phytoplankton Need Zinc to Cope with the Cold
… (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … Science Program (CSP) .  Through this collaboration, in 2017, they published the first genome sequence of a cold-adapted microalga: the diatom Fragilariopsis cylindrus . At that time, they noted that the F. cylindrus genome …
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