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Cultivation of novel Atribacterota from oil well provides new insight into their diversity, ecology, and evolution in anoxic, carbon-rich environments
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Hiroshi Otani
Since joining the DOE Joint Genome Institute in 2016, Dr. Otani has been studying secondary metabolism in microbes, … NJ. New keys to unlock the treasure trove of microbial natural products. Nat Rev Microbiol. 2021 Nov;19(11):683. … transcriptional regulator, is modulated through a novel mechanism. Nucleic Acids Res. 44, 595-607. Otani, H., Lee, …
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JGI User Executive Committee Expands
Six new members have been elected to the User Executive Committee (UEC) … feedback on pangenome tool development. Maurice is a fungal evolutionary ecologist with interests in understanding which … in developing or improving bioinformatics tools that can help with dataset analysis, as well as how they can be …
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Waiting to Respire
Genomes from uncultivated bacteria offers clues to ancestral bacteria’s energy … oxygen as a byproduct. The abundance of oxygen shaped the evolution of life on Earth, and led to the development of … named for Lynn Margulis, the main proponent of the significance of endosymbiosis in evolution of eukaryotes, and …
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From Intern to Published Scientist: The Journey of a JGI-UC Merced Intern
For many scientists, the culmination of their work into a written … with a recent publication in Molecular Biology and Evolution . “It’s my first publication and it feels so … million different species and evidence of their ancestors can be found in fossil records dating over a billion years …
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JGI Earth Month: The Unusual Metabolism That Helps Plants Withstand Drought
In April 2020, we mark both the 50th celebration of Earth Day … plays an essential role. But other plants, which do CAM, can kind of clam up during the day, and open their stomata … to. So, it allows us to be able to tease apart some of the mechanisms that regulate that response to drought through …
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Computationally Classifying Fungal Lifestyles
Machine learning methods were applied on sequenced fungal genomes to … and biofuel production. Learning about the ecology and evolution of  Dothideomycetes could provide more insights … generated a more accurate phylogenetic tree tracking the evolution of  Dothideomycetes fungi. The  work appeared in …
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New Vision, New Mission, New Plan: The JGI’s Next Five Years
New 5-year strategic plan outlines how the JGI will advance the … Genomics to Serve the Changing Planet (download a copy at jointgeno.me/2024StrategicPlan .) This plan aligns … pathogens. The JGI’s advanced data integration and models can be applied toward understanding how climate change might …
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Genome analysis of ‘Candidatus Ancillula trichonymphae’, first representative of a deep‐branching clade of Bifidobacteriales, strengthens evidence for convergent evolution in flagellate endosymbionts
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A chromosome‐scale reference genome of trifoliate orange (Poncirus trifoliata) provides insights into disease resistance, cold tolerance and genome evolution in Citrus
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Directed Evolution of Flavin-Dependent Halogenases for Site- and Atroposelective Halogenation of 3‑Aryl-4(3H)‑Quinazolinones via Kinetic or Dynamic Kinetic Resolution
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Special Initiatives & Programs
Overview The JGI provides sequencing, synthesis, and targeted metabolomics support for DOE-BER funded awards, … methods for high-yield production of advanced biofuels that can be blended with existing transportation fuels. …
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