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A Collaboration to Improve Plant Genome Annotations Across Species
… improvement for plants. As part of that partnership, the JGI and HudsonAlpha researchers led a team that  recently … groups joined the project to contribute to the data for six new species. I must mention that some of the members from … Avinash:   JGI puts huge efforts into generating reference genomes for new species allowing it to fill gaps in the …
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The Case for Conservation
… heavy metal contamination, and drought. The moss genomes’ metabolic pathways could lead to the discovery of … student Sarah Carey, now at the HudsonAlpha Institute for Biotechnology, reported that high quality genome references … to evolve so rapidly in gene content and structure. He and JGI Plant Program head Jeremy Schmutz already see how …
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Natural soil microbes alter flowering phenology and the intensity of selection on flowering time in a wild Arabidopsis relative
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Bacterial response to the 2021 Orange County, California, oil spill was episodic but subtle relative to natural fluctuations.
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Cultivation of novel Atribacterota from oil well provides new insight into their diversity, ecology, and evolution in anoxic, carbon-rich environments
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A More Intuitive Phytozome Interface
… Highlighting the latest interactive version of the JGI’s plant data portal. On August 6, 2021,  version 12 of … website. Since May 2019, v12 has not had any additional genomes added to it, nor had any feature updates. Phytozome  … choose the genome you’re after as the dataset. From the (new and improved JGI Data Portal).  Go to  …
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Plotting a Model for Virus-Host Warfare Deep Below Ground
… Earth’s surface is reconstructed by combining a study of microbial communities (metagenomics) and a chemical … of countering multiple attempts at virus infections. Their genomes include short DNA sequences that code for CRISPR … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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Mining Metagenomes for Cas Proteins
… was made possible by mining the datasets in the Integrated Microbial Genomes and Microbiomes (IMG/M) suite of tools managed by … from infecting viruses and phages. In the event of a new infection, the microbes use the genetic information … UC Berkeley news release  Smallest life forms have smallest working …
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A single-cell genomics pipeline for environmental microbial eukaryotes
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A metagenomic perspective on the microbial prokaryotic genome census
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Overview of Laboratory Workflows for Microbial Single-Cell Genomics
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Activity-based, genome-resolved metagenomics uncovers key populations and pathways involved in subsurface conversions of coal to methane
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