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Dealing with Drought: Uncovering Sorghum’s Secrets
… by a growing human population and increasing demand for agricultural products.  Sorghum bicolor (L.) Moench is … and the U.S. Department of Energy Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … characterizing the mechanisms through which sorghum is equipped to deal with adverse environmental conditions, …
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Building Wet and Dry Lab Skills
… students coming to the DOE Joint Genome Institute for research and training experience funded by a DOE … the supervision of their mentors, they were responsible for all steps of the experiment from growing and inoculating … on to Dori – a computer cluster owned and operated by the JGI and Berkeley Lab – to launch a jupyter notebook running …
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SPRUCE-ing Up Science
… A former JGI intern is now applying his internship lessons on … joined the SPRUCE team, which aims to predict what might happen to the carbon trapped in the peatlands as the world … and graphics land well with those in the audience, he’s always working to fine tune his approach. “I got a lot of that …
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A Collaboration to Improve Plant Genome Annotations Across Species
… works in partnership with the HudsonAlpha Institute for Biotechnology, which specializes in genome improvement for plants. As part of that partnership, the JGI and HudsonAlpha researchers led a team that  recently … urea showed nitrogen and amino acid-specific metabolic pathways were overrepresented in the nitrate-subjected plants …
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Gotta Catch 'Em Gall
… (UC Berkeley and the Joint BioEnergy Institute) are looking for new ways to engineer plants. So they’ve looked into wasps that … how this project unfolded, and how they worked with the JGI's metabolomics program to find out more about these …
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An Automated Tool for Assessing Virus Data Quality
… virus sequences vary widely. In a previous effort, an international consortium recommended specific guidelines and best practices for characterizing uncultivated viruses. Following up on those guidelines, JGI researchers have now developed CheckV (pronounced …
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Georg Rath
… has been leading the Systems Infrastructure Team at the JGI since 2020. Before joining the JGI, he has been working on the boundary of life science and …
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Benjamin Cole
… plant roots, focusing on genetic components required for effective colonization. In addition, Dr. Cole is … University of California, San Diego (PhD, 2011) Rensselaer Polytechnic …
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The Power of One, Amplified
… approaches including amplicon and metagenomic sequencing. For example, they showed that the composition of the … take advantage of bioinformatics tools for  extracting snippets of microbial genomes directly from environmental … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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The Megadata of Lake Mendota – Part 3: Boating Out to David Buoy
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JGIota: The Algae Nicknamed ‘Chlamy’
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Steven Wilson
… Systems Engineering Group lead.   The group is responsible for developing and supporting applications that span the lifecycle of activities at JGI - proposal submission and review, project and work order … added structure and process to the group by developing SOPs for instrument maintenance and operation.   Pursuing an …
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