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Gene Expression: From On-Off Switch to Dial
Proceedings of the National Academy of Sciences (PNAS), offers more ways for scientists to explore the balance of … in multiple applications. This proof-of-concept experiment offers a new approach for fine-tuning gene expression in …
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Integrating Experimentation with Data
… and modeling This three-day joint user meeting will feature insightful presentations, dynamic panel discussions, …
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The More the Merrier: Making the Case for Plant Pan-genomes
… de Zaragoza, one of the paper’s senior authors. “It offers us the possibility to explore genomically the whole …
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Getting to the Bottom of Fungal Functions Across Earth’s Forests
… for sure: there are lots of fungi around. Within a forest’s soil, hundreds of species decompose debris, mobilize … that decay, and deliver those nutrients to tree roots and soil. These fungi help shape a forest’s ecology. They store … found in soil samples, and assembled those RNA transcripts into a metatranscriptome. Overall, they found that despite …
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Long-term excess nitrogen fertilizer increases sensitivity of soil microbial community to seasonal change revealed by ecological network and metagenome analyses
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16S rRNA Gene Amplicon Sequencing Data from Flooded Rice Paddy Mesocosms Treated with Different Silicon-Rich Soil Amendments
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Meta-omics survey of [NiFe]-hydrogenase genes fails to capture drastic variations in H2-oxidation activity measured in three soils exposed to H2
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Doubling Down on Known Protein Families
… ‘Dark Matter’ Microbial communities living everywhere from soils and stomachs to the deep sea are capable of doing a … we have amassed an extensive repository of groundbreaking insights, significantly expanding the horizons of potential … majority of these protein families belonged to bacteria and viruses, though 6 million of the sequences evaded …
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Extracting the Secrets of Secondary Metabolites
… to the lack of robust tools available for carrying CRISPR into microorganisms. CRAGE (Chassis-independent … a light into this “biological dark matter.”  It also offers CRISPR a point of entry. By using CRISPR to knock out …
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Metabolic analysis of the soil microbe Dechloromonas aromatica str. RCB: indications of a surprisingly complex life-style and cryptic anaerobic pathways for aromatic degradation
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Party in the Rhizosphere
There’s a party in the soil, and microbes are the VIPs. They’re feasting on the …
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JGI@25: A Single Cell, Myriad Microbial Discoveries
… as initiators of nitrogen loss in these waters. The top image on the left shows how, from a single bacterial cell …
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