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Engagement Webinar: Utilizing long-read sequencing for metagenomics and DNA modification detection
… to aid with genome assembly and transcriptome analysis of microbial, fungal, and plant research projects.  More … Note that beyond quantity, input quality (i.e., presence of “intact” high-molecular weight DNA) is an important … of the library. 6mA and 4mC (~50x depth), 5mC (~250x depth required). Methylation detection currently only …
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Engagement Webinar: Accessing NEON’s Environmental Sample Archives, Applying JGI & EMSL Omics Tools
… National Ecological Observatory Network (NEON) is a network of field research sites designed to collect long-term open … available for research over 100,000 samples and specimens of over 60 different types of NEON samples and specimens per … more about BioSANS. Letters of Intent are due March 17, 2021 for the FICUS proposal call. Q&A from the Webinar: …
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Nitrosococcus watsonii sp. nov., a new species of marine obligate ammonia‐oxidizing bacteria that is not omnipresent in the world's oceans: calls to validate the names ‘Nitrosococcus halophilus’ and ‘Nitrosomonas mobilis’
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Uncovering Novel Genomes from Earth’s Microbiomes
… Large-scale comparative analysis leads to identification of biosynthetic gene clusters for novel secondary metabolites for multiple applications. Despite advances in sequencing … in a wide range of research fields. A public repository of 52,515 microbial draft genomes generated from environmental …
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Ian Blaby
… Since 2019 Dr. Blaby heads the Biodesign Platform at the Joint … National Laboratory where he focused on functional genomics of phototrophs. Through this and post-doctoral positions at University of Florida and UCLA he has worked with a wide range of … B.Sc. (HONS) – University of Wales, Cardiff, Genetics Ph.D. – University of …
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Help from Citrus’ Bitter, Hardier Cousin
… The chromosome-scale genome sequence of trifoliate orange yields clues to disease-resistance that … from greening disease. You’ve probably never heard of trifoliate orange. Otherwise known as  Poncirus … a disease ravaging citrus groves: citrus greening. From 2012 to 2016, in Florida alone this disease caused an …
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Here, There and Everywhere: Large and Giant Viruses Abound Globally
… JGI-led team significantly expands the global diversity of large and giant viruses. While the microbes in a single … in the soil for the first time. The current study applied a multi-step approach to mine, bin and then filter the data … datasets becoming available but also complementary single-cell sorting and sequencing of viruses together with their …
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Tanja Woyke Elected to American Academy of Microbiology
… Tanja Woyke , who has been elected to the American Academy of Microbiology (AAM) ! She is among the 68 new Fellows in the Class of 2020, selected from 118 nominees. The selection process for … Microbial Genomics Program since 2009 and heads the Single Cells group. She has also served as the Functional Genomics …
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Graduate Students Get Thesis Research Opportunity at the JGI
… Twice a year, the DOE Office of Science Graduate Student Research (SCGSR) program awards … of the latest call , a total of 70 graduate students from 52 universities were selected to carry out part of their … related to clean energy generation and environmental characterization and cleanup. The JGI provides integrated …
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JGI@25: Studying Sorghum’s Survival Skills
… In honor of the JGI's 25th anniversary in 2022, we have revisited a number of … reference genome for Sorghum bicolor . Since then, 2,993 publications, 107 patent applications, and 53 patents have …
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Tanja Woyke Awarded van Niel International Prize for Studies in Bacterial Systematics
… for Studies in Bacterial Systematics for the triennium 2017-2020! Established by the University of Queensland in 1986, the van Niel Prize recognizes … and around the planet–through techniques including single-cell genomics and metagenomics. They cited her “landmark” …
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Expanding Virophage Diversity
… with double-stranded DNA genomes that co-infect eukaryotic cells along with giant viruses. Virophages are small viruses … in  Microbiome , researchers from the US Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office … virophage marker gene MCP, they were able to identify 44,221 total virophage partial sequences, including over 28,000 …
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