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JGI Contributes Eight to 2023 Highly Cited Researchers list
… influence in their chosen field or fields through the publication of multiple highly cited papers during the last decade” by … Nikos Kyrpides, Natalia Ivanova and Simon Roux, along with data from a consortium that included Susannah Tringe and …
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Frederik Schulz
… Schulz joined the DOE Joint Genome Institute in 2016 and is leading the New Lineages of Life Group. His research is focussed on the discovery of … eukaryotic microbes and viruses in environmental sequence data. Dr. Schulz employs multi-omics (metagenomics, … B.Sc. Biochemistry, University of Applied Sciences Mannheim (Germany) M.Sc. Molecular …
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You Can Move, But You Can’t Hide
… Researchers at the JGI develop a tool to quickly and accurately … to replicate themselves and spread from cell to cell. Two of the most common forms of MGEs are viruses and plasmids. … created by researchers under the direction of Microbiome Data Science Group Lead Nikos Kyrpides at the U.S. …
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Learning to Look
… Machine learning approach significantly expands inovirus … “Where’s Waldo?” readers need to look for a number of distinguishing features. Several characters may be … a similar type of search in microbial and metagenomic databases. In this case, the machine “learned” to identify a …
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JGI@25 RECAP: 2022 Annual Meeting features historical perspectives on JGI’s 25 years
… look back at the JGI’s history, from its beginnings in the sequencing for the Human Genome Project out to the future of … years fueling discovery, Anderson looked toward the JGI’s next decades of science with enthusiasm. He pointed toward … in 1997, now takes roughly one second. “It isn’t just the generation of vast troves of data, it’s the new areas of …
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Mindfully Moving JGI
… Berkeley Lab campus. By Friday, October 18, the production sequencing labs in Building 100 were silent. Twenty years … labs in one long building at Walnut Creek, after countless generations of sequencing platforms (up to 120 sequencing … at its peak, all the machines were switched off. Over the next two weeks, they were crated, shipped to, and then …
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Generation of Transcript Assemblies and Identification of Single Nucleotide Polymorphisms from Seven Lowland and Upland Cultivars of Switchgrass
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2022 Progress Report
… Pictured is a timelapse of the Integrative Genomics Building (IGB) seen … Biology Knowledgebase (KBase), the National Microbiome Data Collaborative (NMDC), and Berkeley Lab Biosciences Area …
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Expanding Virophage Diversity
… Virophages are small viruses with double-stranded DNA genomes that … in  Microbiome , researchers from the US Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office … By mining more than 14,000 publicly available metagenomic datasets in JGI’s  Integrated Microbial Genomes & …
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Long-read metagenomics of soil communities reveals phylum-specific secondary metabolite dynamics
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A bacterial pioneer produces cellulase complexes that persist through community succession
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Soil pH influences the structure of virus communities at local and global scales
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