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Metabolic analysis of the soil microbe Dechloromonas aromatica str. RCB: indications of a surprisingly complex life-style and cryptic anaerobic pathways for aromatic degradation
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Cultivating Symbiotic Antarctic Microbes
… cultures reveal they are symbionts and not free-living organisms. The Science Researchers employed multiple … play critical roles in environmental processes (related to interactions of soil-sediment environments, water and … have adapted to thrive in polar ecosystems. The work by Cavicchioli’s team sheds light on the range of archaeal …
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JGI@25: Expanding Metagenomics to Capture Viral Diversity
In honor of the JGI's 25th anniversary in 2022, we have … That study multiplied the number of known viral genes by a factor of 16. The same year, the JGI expanded its … Since then, IMG/VR has grown exponentially. The latest release, IMG/VR v4 features over 15 million viral genomes, …
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iPHoP: A Matchmaker for Phages and their Hosts
…   To understand virus-host dynamics, computation helps fill in what cultivation can’t. The Science At first, viruses are … these microbes. A better understanding of virus-host interactions opens the possibility of using phages to … program,  described in Plos Biology , the research team led by scientists at the U.S. Department of Energy Joint Genome …
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A new reference genome for Sorghum bicolor reveals high levels of sequence similarity between sweet and grain genotypes: implications for the genetics of sugar metabolism
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Deletion of either the regulatory gene ara1 or metabolic gene xki1 in Trichoderma reesei leads to increased CAZyme gene expression on crude plant biomass
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JGI User Executive Committee Expands
Committee (UEC) of the U.S. Department of Energy Joint Genome Institute (JGI), a DOE Office of Science User … Danforth Plant Science Center, where his group focuses on interactions underlying plant adaptation in different … On the UEC she intends to represent the user community by providing input on JGI policies and capabilities that …
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An Inside Look at How Plants and Mycorrhizal Fungi Cooperate
A new view into a symbiosis could offer benefits to address climate … to date. This paper  is the cover article for the April 2024 issue  of  Nature Plants .  “We wanted to better … Institute is a DOE Bioenergy Research Center managed by Berkeley Lab. For more information, please visit  …
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JGI Accepts 17 Proposals for Community Science Program
Monitoring Inter-Organism Interactions Within Ecosystems Latest … of California, Berkeley aims to redesign and engineer algae by identifying the algal regulators that could boost lipid …
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JGI@25: Strengthening Soybean
In honor of the JGI's 25th anniversary in 2022, we have … and oil was also the largest plant project completed by the JGI. It has since been cited more than 5,400 times, … that’s a good niche market for soybean.”  Upon its initial release in 2009, the soybean genome sequence immediately …
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EcoFAB 2025: Advancing Mechanistic Microbial Science Using Fabricated Ecosystems
Register here Book your stay at the conference venue This inaugural event will bring together researchers across major … mechanistic studies.  This conference is inspired by the vision of standardized fabricated ecosystems … biological contexts. The program fosters intimate, dynamic interactions, offering an unparalleled platform for …
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JGI at the AGU Fall Meeting
This year the AGU Fall Meeting, with the theme “Science is Society,” hosts sessions in … through a single research proposal: Maximize Your Research by Harnessing Multiple Scientific User Facilities in One … B25J-1604: Eoin Brodie, Berkeley Lab: “Uncovering microbial metabolic trajectories during the snowmelt period in …
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