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JGI@25: Strengthening Soybean
… In honor of the JGI's 25th anniversary in 2022, we have revisited a number of … and that’s going really well. And having the sequence data available for us to enable that research will have a … Glycine max on Phytozome … Plant Datasets … Fungal Datasets …
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Year in Review: JGI’s 2018 Progress Report Available Now
… The latest edition of the JGI Progress Report highlights notable research and scientific collaborations in 2018. The cover is an image of Mono Lake, a saline soda … by the JGI (isolates here , here and here ), and the data has been used to better understand arsenic mobility and …
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SIPs with Standards
… Stable Isotope Probing (SIP) is a powerful technique for studying microbial … SIP labwork and analysis can be very demanding.  The JGI offers SIP analysis to make these experiments accessible to … more researchers. Ultimately, the goal is to generate SIP data that can be useful to multiple teams and analyses. This …
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iPHoP: A Matchmaker for Phages and their Hosts
…   To understand virus-host dynamics, computation helps fill in what cultivation can’t. The Science At first, viruses are … With metagenomic sequencing, researchers have found more of these viruses than ever before, in all kinds of … used 1,870 known virus-host pairs to generate a matrix of data points.  Applied to 216,015 high-quality virus …
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Mining Metagenomes for Cas Proteins
… Cas14 proteins discovered from JGI’s IMG/M database and biochemically … Institute.  The Science Researchers report the discovery of miniature Clustered Regularly Interspaced Short … The work conducted by the US Department of Energy Joint Genome Institute, a DOE Office of Science …
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Tracking the Origins of Methane-Producing Microbes
… Mini-Metagenomics Approach Helps Identify Novel Archaeal … archaea are estimated to produce 500 million tons of methane a year, which is over half the total global … to use billions of tons of the carbon dioxide trapped in biomass each year to do so. As such, they are considered to …
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Four Researchers Join JGI User Executive Committee
… have been elected to the User Executive Committee of the Joint Genome Institute, a Department of Energy user … advanced genomic capabilities, large-scale AI-ready data and expertise to the global research community to study … scientists and unconventional sample types such as low-biomass samples and host-associated holobionts. She is also …
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When “The Blob” Made It Hotter Under the Water
… Data from marine heatwave event may foreshadow climate change impact on marine microbial communities. The Science A team of researchers tracked the impact of a large-scale heatwave … such as hurricanes and droughts. Another one began in late 2013, when a large patch of warm ocean water about a third …
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High Five: Celebrating the JGI-UC Merced Genomics Internship Program
… than 20 UC Merced students have contributed to the research of 13 JGI scientists since the program’s inception. In 2014, JGI’s Zhong Wang and … early stages, so I can begin biological analysis of the data sooner than I anticipated.” In her message, Dumont …
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Getting to the Bottom of Fungal Functions Across Earth’s Forests
… Across four forests, researchers have leveraged data from the 1000 Fungal Genomes project to form new … registers the sound — one thing is for sure: there are lots of fungi around. Within a forest’s soil, hundreds of species … for degrading fungal cell walls, the so-called fungal necromass, suggesting these guilds share the responsibility of …
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A Revamped Amplification Method that Enables Nearly Complete Single-Cell Genomes
… With a new methodology, scientists are now getting more complete genomic results from single cells. The Science Studying the  genomes of microorganisms is incredibly useful for understanding the … like plasmids, the picture is far from complete.  In 2021 , scientists at St. Jude Children’s Research Hospital …
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Engagement Webinar: What Can You Do With An Approved CSP Functional Genomics Call Proposal?
… DNA Synthesis Science group held a  JGI Engagement: Accessing Functional Genomics Capabilities Webinar inviting … really fully exist back then,” said Hal Alper, a University of Texas at Austin professor, “but we really first heard … Genomics (formerly DNA Synthesis) call, and he noted the data had driven his lab’s focus on guide RNA library …
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