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Climate Change Threatens Base of Polar Oceans’ Bountiful Food Webs
… are.” But according to a new study published September 16, 2021 in Nature Communications , warmer waters and … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … their RNA transcripts. All sequencing was done through the JGI Community Science Program . Using an ecology metric …
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Making a Lichen Together
… Their partnership is widespread and cosmopolitan: more than 20,000 ascomycete species and hundreds of microalgae are … the US Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility. Grigoriev and his team at the JGI contributed to annotation of the genomes, available …
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DAP-seq Drives Robust Mapping of Gene Regulation
… Implementation Lead at the DOE Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … author on the paper and computational biologist at the JGI. “We had to work really hard to make them work for the … beyond plants. Currently, this technology is available to JGI users for studies on organisms with smaller genomes, …
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Doubling Down on Known Protein Families
… big the room is.  A new study  published online Oct. 11, 2023 in  Nature highlights the vast array of functional … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … into the uncharted territory of understanding the vast landscape of functional diversity, but we have also pushed the …
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The Power of One, Amplified
… the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … was performed by Danielle Goudeau and Rex Malmstrom of the JGI’s Microscale Applications group . Cells were randomly … amplified, then sequenced and assembled. Robert Bowers , a JGI scientist within the Microbial Program, led the genomic …
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Fishing for Novel Cellulose Degraders
… the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … of potential applications to industrial processes. Summary JGI researchers developed a function-driven, single-cell … Contract No. DE-AC02-05CH11231. The work was supported by a JGI Director’s Science award. The DOE Joint BioEnergy …
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Open Frameworks Training the Next Generation of Scientists
… faculty and researchers at the DOE Joint Genome Institute (JGI), a DOE Office of Science User Facility, and the DOE Systems Biology Knowledgebase (KBase). The JGI and KBase are both supported by the DOE Biological and … (Module 1), Experimental Design and Sample Metadata (Module 2), Sample Collection and Processing (Module 3), Data …
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Improved High-Quality Draft Genome Sequence of the Eurypsychrophile Rhodotorula sp. JG1b, Isolated from Permafrost in the Hyperarid Upper-Elevation McMurdo Dry Valleys, Antarctica
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Fungus Fuels Tree Growth
… the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility, through its  … is managed by UT-Battelle, LLC, under contract DE-AC05-00OR22725 for the DOE. The work conducted by the DOE Joint … Ecosystems (ARBRE) (ANR-11-LABX 0002 01 to F. Martin), JGI Community sequencing program project (CSP570, …
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Calculating the Costs of Multiple Switchgrass Gene Copies
… the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility, has discovered … range, but at what cost? In the following guest piece, postdoctoral researcher Joseph Napier from the Juenger lab … Using a combination of genomic, quantitative genetic, landscape, and niche modeling approaches, we contrasted the …
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Georg Rath
… has been leading the Systems Infrastructure Team at the JGI since 2020. Before joining the JGI, he has been working on the boundary of life science and …
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Sequencing Sphagnum Leads to Discovery of Sex Chromosomes
… a genus of just under 400 mosses that can carry up to 25 times their dry weight in water, makes up the … The work (proposal no. 10.46936/10.25585/60001030) (A.J.S.) conducted by the US Department of … User Facility, is supported under contract no. DE-AC02-05CH11231. …
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