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An Automated Tool for Assessing Virus Data Quality
… uncultivated viruses. Following up on those guidelines, JGI researchers have now developed CheckV (pronounced … suite, as well as sequences from the Global Ocean Virome 2.0 dataset based on open ocean samples. CheckV identified a total of 44,652 complete or near-complete viral genomes across both …
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How Maize Makes An Antibiotic Cocktail
… as  Sorghum bicolor — a  candidate bioenergy feedstock and  JGI Flagship Plant — could produce at least 15 zealexins. … dexterous enzymes— terpene synthases and cytochrome P450s — that catalyze multiple products, resulting in many … Institute Community Science Program (JGI-CSP) grant (CSP2568 to P.Z., ES and AH), and by a fellowships provided by …
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Making a Lichen Together
Their partnership is widespread and cosmopolitan: more than 20,000 ascomycete species and hundreds of microalgae are … the US Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility. Grigoriev and … DA, FL, and FD (for bioinformatics) from a DOE grant No 112442 to Pacific Northwest National Laboratory; and by a …
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JGIota: A Biofuel Breakthrough in Anaerobic Fungi with Michelle O'Malley and Tom Lankiewicz
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JGIota: A Surprise for Chloroflexota — The First Flagella!
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Ancient Algae Reveal Secrets of Plant Evolution
… the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … three strains of  Zygnema circumcarinatum . Published  May 2024 in  Nature Genetics by an international research …
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Filling in the Plant Tree of Life
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Decoding Yellowstone’s Microbial Mats
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When “The Blob” Made It Hotter Under the Water
… such as hurricanes and droughts. Another one began in late 2013, when a large patch of warm ocean water about a third … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … supported by the Danish Research Council (grant DFF-7027-00043B) and CTEK by the Tula Foundation. …
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Sequencing Sphagnum Leads to Discovery of Sex Chromosomes
… as carbon sources. Summary Sphagnum, a genus of just under 400 mosses that can carry up to 25 times their dry weight in water, makes up the … protecting these ecosystems. … The work (proposal no. 10.46936/10.25585/60001030) (A.J.S.) conducted by the US …
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Supercharging SIP in the Fungal Hyphosphere
… communities, with results published in the  November 2022 issue of Microbiome . High-throughput stable isotope … HT-SIP is a capability available to request through  the JGI proposal calls . … Work at Lawrence Livermore National … the auspices of the U.S. DOE under Contract DE-AC52-07NA27344. The work conducted by the U.S. Department of Energy …
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In Hot Spring Microbial Mat, Viruses Ride “Piggyback”
… mats are wildly prevalent, containing an estimated 40 to 80 percent of all the microbial cells on Earth. As … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … and archaeal cells — and detected the virus in 34 hosts or 26 percent of the single cells. Metagenomics sequencing then …
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