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The Surprising Structure of a Shrub Willow Sex Chromosome
… first time, the sex chromosomes of shrub willow have been sequenced with sufficient resolution to analyze their … mechanisms of sex determination could also lead to new approaches to accelerate flowering, which can speed the … and thus be used as templates to correct mutations. This process, called gene conversion, helps maintain the …
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Gene Expression: From On-Off Switch to Dial
… and included researchers at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science … approach to fine-tune gene expression. They tested this new methodology in yeast ( Saccharomyces cerevisiae) to … a single RNA piece that recognizes a particular area in the DNA, to determine which targets might benefit from an …
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The genome of Syntrophorhabdus aromaticivorans strain UI provides new insights for syntrophic aromatic compound metabolism and electron flow
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New Biological Insights Into How Deforestation in Amazonia Affects Soil Microbial Communities Using Metagenomics and Metagenome-Assembled Genomes
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Sequence-based bioprospecting of myo-inositol oxygenase (Miox) reveals new homologues that increase glucaric acid production in Saccharomyces cerevisiae
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SPRUCE-ing Up Science
… computer program would best serve their quests related to processing RNA-sequencing information. According to … and a final round of presentations.  “That really helped build my communication skills. Their questions were often … mediate Sphagnum peatmoss resilience to warming . New Phytol. 2022 Jun;234(6):2111-2125. doi: …
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Tanja Woyke Elected to American Academy of Microbiology
Academy of Microbiology (AAM) ! She is among the 68 new Fellows in the Class of 2020, selected from 118 nominees. The selection process for AAM Fellows is based on their records of … and giant viruses belonging to the nucleocytoplasmic large DNA viruses (NCLDV) supergroup. As a result, the giant virus …
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Conserved unique peptide patterns (CUPP) online platform 2.0: implementation of +1000 JGI fungal genomes.
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JGI Plant Gene Atlas: an updateable transcriptome resource to improve functional gene descriptions across the plant kingdom
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A Powerful Technique to Study Microbes, Now Easier
Lab biologist Jennifer Pett-Ridge collaborated with JGI scientists on an ambitious project: to bring in robots to help process experiments that measure microbial activity in soil. …
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Finding the Fermenters
… life had found other ways to produce energy, using a process called fermentation. To better understand the range … multiple sources, including the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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The Megadata of Lake Mendota - Part 1: Many, Many Mers
… to analyze 500 metagenomes, it was the biggest project the JGI had ever put together.  The next 3 episodes are the … that giant assembly from Lake Mendota. In this episode: the software evolution that made metagenome assemblies like this …
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