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Supporting Global Research into Actinomycetes
… into special groups of actinobacteria Streptomyces is more than just a funny word. The 500 species described within the group are responsible for roughly two-thirds of antibiotics, and a deeper … in soil and can be used as biocontrol agents and to promote plant growth. It is the largest genus within Actinobacteria …
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Engagement Webinar: Harnessing JGI’s Metabolomics Capabilities
… measurements of primary and secondary metabolites from plants, microorganisms, and environmental samples using … involved? How long does it take to do all the analyses? A:  For the JGI  New Investigator and  Functional Genomics … are strongly sorbed to the clays. Sandy soils are much more likely to work well for metabolomics.  Q:  What tool or …
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How genomics can help unravel the evolution of endophytic fungi
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Richard Fox
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Variation in Adult Plant Phenotypes and Partitioning among Seed and Stem-Borne Roots across Brachypodium distachyon Accessions to Exploit in Breeding Cereals for Well-Watered and Drought Environments  
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Building Wet and Dry Lab Skills
… students coming to the DOE Joint Genome Institute for research and training experience funded by a DOE … Mikes worked with mentors Yi Zhai and John Vogel from the Plant Functional Genomics Group to study the effects of  … microbiome data via programming languages like Python. The more specific goal of the project is to determine how …
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Axel Visel
… the DOE Joint Genome Institute in 2010. As the Deputy for Science Programs, he focuses on the development and … in Hanover, Germany, where he developed novel tools for large-scale in situ gene expression analysis in … for elucidating the gene regulatory landscape of vertebrate genomes, which led to the discovery of thousands of genetic …
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Nick Everson
… the DOE Joint Bioenergy Institute and the Operations Deputy for LBNL’s Biological Systems & Engineering Division. Prior … to his tenure with Berkeley Lab, he served in the US Navy for 6 years as a submarine electrician and a financial analyst in industry and at the Lawrence Livermore National Laboratory.   …
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Extracting the Secrets of Secondary Metabolites
… secondary metabolites, those molecules not essential for growth yet essential for survival, may now be easier to … Secondary metabolites are highly regulated in bacteria, making it difficult to identify which pathway corresponds to … for fuel.  The impact of the pairing could prove to be much more far-reaching. The compatibility of CRAGE and CRISPR …
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Plotting a Model for Virus-Host Warfare Deep Below Ground
… fresh organic carbon which can serve as a food source for other microbes into the environment. Summary In J. R. R. … of countering multiple attempts at virus infections. Their genomes include short DNA sequences that code for CRISPR … Berkeley National Laboratory (Berkeley Lab). To learn more about how microbial populations respond to virus …
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JGI@25: Cow Rumen and the Early Days of Metagenomics
… we have revisited a number of notable achievements that showcase our collaborations and capabilities to enable great … the ability to break down hardy plant cell walls and therefore hold clues to how humans could do the same on an … enzymes are an optimal study subject that could lead to more sustainable energy production.  However, less than 10% …
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Dealing with Drought: Uncovering Sorghum’s Secrets
… earth are becoming common images in many regions due to more extreme weather events such as heat waves, droughts and … by a growing human population and increasing demand for agricultural products.  Sorghum bicolor (L.) Moench is … by the JGI in 2009 and it is considered to be a Flagship Plant. By uncovering and characterizing the mechanisms …
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