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Marine Microbe Contains Multitudes
… at different depths. But SAR324 can be found throughout the water column, from the warm, well-lit surface, to the blue-lit twilight … to the metabolisms that individual SAR324 cells can carry out. The work on single cells was done in collaboration with … This research was supported by grants from the Simons Foundation (#329108 and #721223 to EFD) and …
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Doubling Down on Known Protein Families
… ‘Dark Matter’ Microbial communities living everywhere from soils and stomachs to the deep sea are capable of doing … communities via whole genome sequencing of the samples, without being able to distinguish which gene belongs to each … — that is, they are similar to previously known genes from isolate organisms, but we still aren’t sure of their …
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Calculating the Costs of Multiple Switchgrass Gene Copies
… guest piece, postdoctoral researcher Joseph Napier from the Juenger lab and computational biologist Paul Grabowski of HudsonAlpha outline the questions they asked – and answered – in the … by the number of 8X individuals that had been collected from field work. When viewing the full distribution of …
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A Natural Mechanism Can Turbocharge Viral Evolution
… and viral genomes, as well as genomes sampled all at once from the same environment, called metagenomes. Why? Simon … gauntlet of other cell defenses that could prevent viruses from successfully replicating, even if they managed to enter … proteins to recognize individual pathogens and pull them out, like fish on a fishing line, without harming the rest …
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An Enzyme Family that Helped Shape Nitrogen Metabolism on Our Planet
… family evolved across 90 species. “One unique thing about this work was our focus on all the kingdoms, including … found that these enzymes have evolved distinctly from both core and specialized enzymes. Even during … across 90 species. They queried the genomes of 15 species from each of six kingdoms: eubacteria, archaea, protist, …
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A Novel Freshwater to Marine Evolutionary Transition Revealed within Methylophilaceae Bacteria from the Arctic Ocean
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Draft Genome Sequence of Yokenella regensburgei Strain WCD67, Isolated from the Boxelder Bug
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MaxBin: an automated binning method to recover individual genomes from metagenomes using an expectation-maximization algorithm
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Unique genomic traits for cold adaptation in Naganishia vishniacii, a polyextremophile yeast isolated from Antarctica
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Assembly of Robust Bacterial Microcompartment Shells Using Building Blocks from an Organelle of Unknown Function
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Sediment microbial communities in Great Boiling Spring are controlled by temperature and distinct from water communities
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Lessons from Two Design–Build–Test–Learn Cycles of Dodecanol Production in Escherichia coli Aided by Machine Learning
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