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A Grass Model to Help Improve Giant Miscanthus
… multiple chromosomes of Miscanthus arose by ancient hybridization (polyploidy) and insights into the dynamics of gene … Biosciences Institute, the DOE Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … tetraploid, with four sets of chromosomes; the study showed that these sets descend from two now-extinct progenitors. …
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The Roseibium album (Labrenzia alba) Genome Possesses Multiple Symbiosis Factors Possibly Underpinning Host-Microbe Relationships in the Marine Benthos
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Updating algal evolutionary relationships through plastid genome sequencing: did alveolate plastids emerge through endosymbiosis of an ochrophyte?
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DAP-seq Drives Robust Mapping of Gene Regulation
… yield an unprecedented view of plant evolution and adaptation.    Understanding how genes are regulated is like … have developed multiplexed assays — experimental techniques that allow simultaneous measurement of multiple samples in a … Implementation Lead at the DOE Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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Olpidium, The Key to the Origin of Terrestrial Fungi
… fungi of Chytridiomycota (the “chytrids”).  A collaborative team led by Joey Spatafora at Oregon State University, … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility, found that the fungus Olpidium is a link in the evolution and …
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Cracking the Secrets of the Diatom’s Shell
… Diatoms, a group of tiny algae, are also known as “living opals” because of the … strange, beautiful properties of their silica shells. But what genes are responsible for such mesmerizing exteriors? Setsuko Wakao and Kris Niyogi, biologists at both UC Berkeley and Lawrence Berkeley National …
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The More the Merrier: Making the Case for Plant Pan-genomes
… merrier,” with respect to their genomes. In their base state, they are diploids with two genome copies, one from each … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … short life cycles and can be easily transformed, traits that make them easy to work with bioinformatically and in …
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John Vogel
… Dr. Vogel joined JGI in 2014 to establish a plant functional genomics … Prior to this, he served as a Research Molecular Biologist at the USDA for 12 years where he was a driving force behind the development of numerous genomic resources that fostered the widespread adoption of Brachypodium …
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Discovery and ecogenomic context of a global Caldiserica-related phylum active in thawing permafrost, Candidatus Cryosericota phylum nov., Ca. Cryosericia class nov., Ca. Cryosericales ord. nov., Ca. Cryosericaceae fam. nov., comprising the four species
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Accelerating Metagenomics Discoveries with Deep Learning
… On July 6, scientists from Lawrence Berkeley National Laboratory (Berkeley Lab) and other institutions … the US Department of Energy (DOE) Joint Genome Institute (JGI), presented on generating vector representations of … He also aims to detect structural similarities in proteins that low sequence identity may belie. The technology he’s …
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PhycoCosm Tutorial
… PhycoCosm, the largest interactive collection of sequenced algal genomes, omics data and comparative analysis tools developed by the Joint Genome Institute (JGI), a US Department of Energy Office of Science user …
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Engagement Webinar: How to Apply for Resources at Multiple DOE User Facilities
… On February 17, 2021, JGI and the Environmental Molecular Sciences Laboratory (EMSL) co-hosted a JGI Engagement: Accessing Resources … Q: In her presentation, Michelle O’Malley said that having constant conversations helped with the proposal … and environmental characterization and cleanup. The JGI provides integrated high-throughput sequencing and …
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