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Tracing the Evolution of Shiitake Mushrooms
… structures, as well as atmospheric carbon dioxide.  Summary Researchers sequenced 11 samples from Asia–Australasia and … samples was a global collaboration that brought together 39 researchers from eight different countries. Genome and … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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The Fungi That Survive In Antarctica
… survive hotter, drier climates. So University of Tuscia researchers Laura Selbmann and Claudia Coleine are working with scientists from around the world – and the JGI – to understand them better. …
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Evolution of a Fungal Gene Expression Regulator
… genomes, but is not well understood in fungi. A team of researchers reported on the largest analysis of 5mC … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility, and others like … Robert Schmitz at the University of Georgia and including JGI researchers conducted the largest analysis to date of …
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A New Actinobacterial Chapter in the Genomic Encyclopedia of Bacteria and Archaea
… yet much of it remains unknown. For more than a decade, researchers around the world have collaborated with the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … Natalia Ivanova, senior author of the study and head of the JGI’s Microbiome Annotation Group. Many of these bacterial …
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How to Target a Microbial Needle within a Community Haystack
… complex environmental samples. The Science A team led by researchers at the Max Planck Institute (MPI) for Marine … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … Development of this protocol was enabled by the JGI’s  Emerging Technologies Opportunity Program . The ETOP …
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Engagement Webinar: How to Successfully Apply for a CSP Proposal
… On September 1, JGI held a JGI Engagement: Pro Tips for Successful Community … Science Program (CSP) Applications Webinar inviting researchers to submit white papers to the CSP  New … that you don’t request outside of the sample range that’s listed. Q: What are the pros and cons of proposing a truly …
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Boosting Small Molecule Production in Super “Soup”
… As reported August 26, 2021, in Nature Communications , researchers led by Hal Alper at The University of Texas at … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … and that’s one of these things that we’re really excited about in the future, to see if that’s possible.” Alper …
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Accelerating Metagenomics Discoveries with Deep Learning
… assemble and interpret. The workshop aimed to showcase how researchers are utilizing deep learning to automatically … the US Department of Energy (DOE) Joint Genome Institute (JGI), presented on generating vector representations of … such as  Mash and  BBsketch , whose lead developer is JGI software developer Brian Bushnell, no alignment-free …
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Back in the Lab: the 2023 Summer Intern Experience
… internship experience in several years for students and researchers alike at the JGI. With the past few years upended by the pandemic, 2023 … the opportunity to collaborate with and learn from fellow researchers onsite as well. …
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Boosting Small Molecule Production in Super “Soup”
… As  reported August 26, 2021, in  Nature Communications , researchers led by Hal Alper at The University of Texas at … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … and that’s one of these things that we’re really excited about in the future, to see if that’s possible.” Alper …
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Interdisciplinary delegation from the University of Duisburg-Essen explores collaborative opportunities with Lawrence Berkeley National Laboratory
… One Health Ruhr (OHR), and the DOE Joint Genome Institute (JGI), Molecular Biophysics and Integrated Bioimaging (MBIB) … user facilities at Berkeley Lab. Commenting on the visit, JGI Director Nigel Mouncey expressed enthusiasm about the … in sequence in real time at an atomic resolution. We are excited to start our collaboration to expand these operando …
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Fungus Fuels Tree Growth
… Researchers start pinning down how a fungal symbiont spurs … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility, through its  … found that, unlike pathogenic or mycorrhizal fungi (mutualist symbionts that induce structural changes in plant …
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