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… developments for improving microbial, metagenomic, or plant genome assemblies. [Download PDF] Q2 – Report on … improving the interpretation of microbial, metagenomic, or plant genomes. [Download PDF] End-of-year Goal – Develop one …

… and the use of laboratory resources. Capacity for the plant growth chamber is limited so that will have to be …

… in 2018. She selected one of the projects posted by JGI fungal researchers, Igor Grigoriev and Asaf Salamov, and … “Fungi are the masters of adaptation,” Wint explained. The fungal kingdom contains over one million different species … theory — the most expressed genes found across each of the fungal species were protein-coding hotspots. “Ensuring that …

… CSP call had five areas of emphasis: genes to function, plant and algal functional genomics, inter-organismal interactions, understanding natural communities important …

… little water, full sunlight and hot temperatures, sorghum plants can photosynthesize and thrive — some varieties grow … climate has earned it a place on the JGI’s Flagship Plant Genome roster. Sorghum has an important feature in … It performs C4 photosynthesis, which is the fastest way for plants to convert carbon dioxide and water into sugars and …

… flavor of wine, terpenes are ubiquitous. A diverse group of plant-produced organic compounds, terpenes play key roles in plant growth, defense, and environmental interactions. Terpenes are also economically important …

… that offers participating teams the opportunity to either jumpstart acceleration or optimize their code on GPUs. While … future HPC systems – our data and compute challenges aren’t getting any smaller and we need to keep pace with changes in …

… and environmental DNA sequencing to explore microbial and plant interactions across unique ecosystems, from alpine soils to …

… A new approach for improving functional annotation in fungal genomes. The Science In a proof-of-concept study, … including biofuel production. Efforts such as the 1000 Fungal Genomics Project led by the DOE Joint Genome … National Laboratory, aim to improve our understanding of fungal diversity by sequencing genomes from across the …

… the JGI’s Community Science Program (CSP) focuses on a fungal comparative ENCODE project known as FUNCODE. “We noticed a few years ago that there is no shortage of fungal genomes anymore, but their functional interpretation … species to answer questions about how they break down plant materials, which could be useful for industrial …

… Matt is broadly interested in the interactions between microbial life and environment, and …

… measurements of primary and secondary metabolites from plants, microorganisms, and environmental samples using … Program , along with Jenny Mortimer, Director of Plant Systems Biology at the Joint BioEnergy Institute … molecules exchanged between plants and microbiomes during interactions? Is it reliable performing an untargeted …