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Applying Viral Genomics Expertise to Understanding the Human Virome
…  Integrated Microbial Genomics and Microbiomes (IMG/M) system. The Program aims to better understand the viruses … The work is supported by NIH Common Fund grant 1U01DE034196-01. The JGI team, including Kyrpides, Camargo, and … sequencing and computational analysis that enable systems-based scientific approaches to these challenges.  …
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Ray Turner Completes Last Tour of Lab Duty at JGI
Ray oversaw the acquisition and renovation of Building 310, adding the crowning piece of the entire 80,000 square … Associate Director of Science; Todd Anderson, Biological Systems Science Division Director; and Ramana Madupu, BER … Institute and Deputy for Operations Biological Systems & Engineering Division. “I feel so lucky that I get to have …
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Zhong Wang
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Doubling Down on Known Protein Families
… big the room is.  A new study  published online Oct. 11, 2023 in  Nature highlights the vast array of functional … families and novel functions in as-yet unveiled microbes. Harnessing the collective power of more than 26,000 … environment — whether that be soil, animal hosts, marine ecosystems, etc.  “So, they must be doing something interesting …
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Game On: High School Students Drive Everglades Metagenomics Study
… (metabolizing) methane within the Florida Everglades ecosystem. There are no roads or real human traffic through … to assist them with soil sample analysis for nitrogen and carbon concentrations along with water content. The class … sequencing and computational analysis that enable systems-based scientific approaches to these challenges.  …
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EcoFAB 2025: Advancing Mechanistic Microbial Science Using Fabricated Ecosystems
… event will bring together researchers across major ecosystems and disciplines who are developing and applying laboratory ecosystems to help transition microbiome science from largely … is inspired by the vision of standardized fabricated ecosystems (EcoFABs) designed for precise manipulation and …
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JGI@25: Tracking & Subduing the Plague of California’s Oak Woodlands
All told, the disease has accounted for upwards of $30 billion in losses , including the death of tens of … protocol for injecting a solution that bolsters the immune system of oaks and enables them to fend off the effects of … and mechanisms of pathogenesis . Science. 2006 Sep 1;313(5791):1261-6. doi: 10.1126/science.1128796 Science News …
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Ben Bowen
… … BS – University of Arkansas, Fayetteville, Chemical Engineering Ph. D. – Arizona State University, Tempe, Chemical Engineering Post-doctoral positions – Arizona State … NIH K25 Mentored Career Development awardee 1998-2003: NSF Graduate research training fellowship in biomolecular …
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A New Actinobacterial Chapter in the Genomic Encyclopedia of Bacteria and Archaea
… environments, actinobacteria play roles in both the carbon and nitrogen cycles, break down plant mass (think … BGC Repertoire in Actinobacteria Over the years more than 3,400 genomes have been sequenced from curated DSMZ … sequencing and computational analysis that enable systems-based scientific approaches to these challenges.  …
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Picking Up Threads of Cotton Genomics
All of these cotton lineages have genomes approximately 2.3 billion bases or Gigabases (Gb) in size, and are hybrids … Agricultural University (China), Texas A&M University System, U.S. Department of Agriculture-Agricultural Research … sequencing and computational analysis that enable systems-based scientific approaches to these challenges.  …
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Taking Stock of the Known and Unknown Microbial Space
… biofuels and bioproducts, and medicine. Wading through 30 years of sequencing data, the team composed of Wu, … the team found that bacterial isolate genomes represent 9.73% of the total estimated diversity of the available … sequencing and computational analysis that enable systems-based scientific approaches to these challenges.  …
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Hiroshi Otani
… and why microbes decide to produce which metabolites. … BS, Engineering, Tokyo Institute of Technology Master's, … bacterial RiPP biosyntheses. J Ind Microbiol Biotechnol. 2023 Feb 17;50(1):kuad005.  Otani H, Udwary DW, Mouncey NJ. … Nov 7;12(1):18909. Otani H, Mouncey NJ. RIViT-seq enables systematic identification of regulons of transcriptional …
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