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IMG/VR
… JGI's Simon Roux describes the structure and content of the IMG/VR v3 database (img.jgi.doe.gov/vr), the latest release of IMG database dedicated to viral genomes assembled from …
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A One-Stop Shop for Analyzing Algal Genomes
… The PhycoCosm data portal allows anyone to freely investigate the genes of … Research journal. The genome portal reinforces the JGI’s new strategic focus on exploring algal biology, diversity, … Microbiomes (IMG/M) system for microbial and metagenome datasets, MycoCosm for comparative analysis of fungal genomes, …
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Nitrosococcus watsonii sp. nov., a new species of marine obligate ammonia‐oxidizing bacteria that is not omnipresent in the world's oceans: calls to validate the names ‘Nitrosococcus halophilus’ and ‘Nitrosomonas mobilis’
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A Complex Confection Decoded: Sugarcane Reference Genome
… Sugarcane was the last major crop without a reference quality genome and now crop researchers can work toward … the genome required a custom pipeline and techniques. High quality primary assembly not only includes a full … The reference genome of R570 is available on the JGI plant data portal,  Phytozome .   …
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Mindfully Moving JGI
… October 18, the production sequencing labs in Building 100 were silent. Twenty years after the JGI united the … at its peak, all the machines were switched off. Over the next two weeks, they were crated, shipped to, and then … installed at the  Integrative Genomics Building , JGI’s newly-built home located in the heart of the Berkeley Lab …
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Streamlining Regulon Identification in Bacteria
… environments are expressed when their functions are needed. Data yielded through RIViT-seq expand the known … alternative sigma factors to initiate transcription of gene sets associated with functions like stress responses and … addressed in the study were found to control more than 100 genes, one of which was directly characterized by …
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Tina Clarke
… from Sonoma State University. Early on, Ms. Clarke knew the importance of understanding human and group … relations matters and coaching supervisors and managers. Years later she received her MA degree in Counseling from … (SAP Acquired Company), Dublin, CA, HR Manager 2000 – 2007 New Era of Networks (Sybase Acquired Company), Pacheco, CA …
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Decoding Yellowstone’s Microbial Mats
… they began oxygenating Earth over two billion years ago. A team of researchers set out to Yellowstone … mats. Along the way, they’ve encountered surprises, adopted new technologies, and made a few discoveries about the …
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Viruses Reprogram Cells into Different Virocells
… them. In the ocean, viruses outnumber surface microbes 10 to 1, and 20% to 40% of the microbes are infected at any … developing more efficient predictive ecosystems models. Next, the researchers are working towards better …
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The JGI announces FY25 awardees for our Community Science Program Annual Call
… seven researchers are returning, including one previous New Investigator awardee.  The CSP Annual call is focused on … learn more about this call, as well as our smaller-scale New Investigator and Functional Genomics calls, here on our …
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Microbial Genomics & Metagenomics (MGM) Workshop
… users with the Integrated Microbial Genomes & Microbiomes (IMG/M) data and workflows for computational analysis and interpretation of sequence data. IMG/M is a web-based platform that provides access to …
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