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Researching and Solving Real-World Problems with the 2023 JGI-UC Merced Interns
… For the first time in several years, the DOE Joint Genome … Study of Root Colonization by Resident Phages of a Plant Growth Promoting Rhizobacterium Graduate Interns Tahirah … together on predicting the level of photosynthesis in a model green alga called Chlamydomonas reinhardtii. We’re …
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Cultivating Symbiotic Antarctic Microbes
… organisms as had been originally thought. The Impact The Antarctic lakes are a “treasure trove” of unknown microbes … in the Antarctic lakes and offers a genetically-tractable model system that could help researchers better understand … of an obligate symbiont—entirely dependent on the other for required nutrients—is genome size. The obligate …
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Draft genome sequence of Dethiobacter alkaliphilus strain AHT1T, a gram-positive sulfidogenic polyextremophile
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From Berkeley to Binghamton: Tracking Strawberry Evolution
… also holds a joint appointment with the University of California, Berkeley. Nowadays, Session is an Assistant Professor at Binghamton University in New York. He and … help crop breeders and researchers predict how crops and model organisms may evolve.  Determining the genetic codes …
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Matt Blow
… Together, these teams provide analysis support and R&D for production and user science. He received his Ph.D. from … Shulse et al. 2019. Engineered Root Bacteria Release Plant-Available Phosphate from Phytate. Appl Environ Microbiol … 85(18):e01210-19 Price et al 2018. Mutant phenotypes for thousands of bacterial genes of unknown function. Nature …
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The Expanding Universe of Methane Metabolisms in Archaea
… of the Earth’s atmosphere and regulating the global climate for life to flourish. For Guillaume Borrel and Simonetta … to the different pathways we see today is not only important to understand early life, but also to link the evolution … undescribed lineages, and the other five only distantly related to known methanogens. With the help of this …
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Improving the Cacao Genome and Phytozome
… brands couldn’t exist without cocoa.  But today the plant is under threat due to climate change and devastating … infections. That’s why Mars, Inc., a maker of chocolate for more than 100 years and one of the world’s largest … others to develop healthier and more productive cacao plants and ensure there will be cocoa for chocolate tomorrow …
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Picking Up Threads of Cotton Genomics
… cotton fields look like popcorn is literally growing on plants, with fluffy white bolls bursting out of the green pods … , both faculty investigators at the HudsonAlpha Institute for Biotechnology. “The goal has been for all this new … is almost entirely made up of cellulose and it is a fiber model to understand the molecular development of cellulose. …
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Webinar: SIP technologies at EMSL and JGI
… from the Webinar: 1. Q(uestion): How much DNA is required for the JGI SIP metagenomics pipeline? A(nswer):  The more the better. We want to put at least a microgram of DNA in the tube so you’d … possibly be incorporated with some of KBase’s metabolic modeling narratives A:  KBase doesn’t currently have …
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JGI@25: From Life at the Extremes to Editing Genomes
… Congratulations to Jennifer Doudna of the University of California (UC), Berkeley and Lawrence Berkeley National … accessible metagenomic datasets from a wide variety of ecosystems around the world, conducting iterative searches … good chance that nature was using it to do something important.” Related Publications:  A scoutRNA Is Required for Some …
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Kjiersten Fagnan
… Fagnan began working with JGI in 2012 as a NERSC bioinformatics computing consultant, after completing a petascale postdoctoral fellowship at … focused on stable and accurate computational methods for reacting subsurface flows, and evolved into scalable … Kjiersten Fagnan is the JGI's Chief Informatics Officer. Click to learn more about how the JGI …
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Four principles to establish a universal virus taxonomy
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