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Improving the Cacao Genome and Phytozome
… Cocoa Organization (ICCO), global cocoa bean production in 2017-2018  was 4.6 million metric tons . The global chocolate … and ensure there will be cocoa for chocolate tomorrow In 2010, a draft first genome of  Theobroma cacao  – the tree …
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JGI User Executive Committee Expands
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Products
… Program leads to discuss available options. Note: In 2021, we conducted an extensive internal product audit to … Program Product Description Deliverables Cycle Time FY25 Q1  (median/75th percentile*) DNA Synthesis Constructs … Pool of variant libraries; sample sequencing to determine coverage of variants depends on project Fungal Minimal Draft …
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JGI@25: Building a Better Bean
… In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable achievements that … as well as nitrogen fixation; and has enabled discoveries in additional crops such as peanuts, black-eyed …
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Getting to the Bottom of Fungal Functions Across Earth’s Forests
… of these varied biomes; the forests share only about 20% of their fungal species. To make useful comparisons, the … Science Program proposal that Martin submitted in 2012. At that time, the field had surveyed many different … tropics.”  Francis Martin will be a keynote speaker at the 2024 DOE Joint Genome Institute (JGI) Annual Genomics of …
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What Happens Underground Influences Global Nutrient Cycles
… DOE user facilities EMSL and JGI announce FY 2020 collaborative FICUS projects. Through the Facilities … to functionally link gene families to photosynthesis and discover gene functions that may be relevant to both algae and … national user facility that accelerates scientific discovery and pioneers new capabilities to understand …
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Toasting to the 2020 JGI-UC Merced Summer Internship Program
… to date.  This summer internship program, which began in 2014, pairs undergraduate and graduate students from UC … I was so impressed with the work everyone has done.” The 2020 JGI-UC Merced interns and mentor/s: Brendan Blasius & …
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A Collaboration to Improve Plant Genome Annotations Across Species
… plants did you all look at? Avinash: We started off with 12 plants, which are JGI Flagship Plants, mostly related to … we are looking at 18 different species, which included over 2000 RNA Seq libraries. As I previously mentioned, this is … to standardize the experimental protocols. Then, in 2020, seven more groups joined the project to contribute to …
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JGI Interns at UC Merced Earn CAMP Merit Awards
… technology, engineering and math (STEM) fields. At the 2016 CAMP Statewide Undergraduate Research Symposium , held …   “It is a beautiful thing, that our young campus earned 25% of the research awards,” said Jesús Cisneros, director …
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JGI@25 RECAP: 2022 Annual Meeting features historical perspectives on JGI’s 25 years
… As part of the JGI’s 25th anniversary celebration, the 2022 Annual Meeting featured speakers who shared a look back … From the vantage point of JGI’s 25 years fueling discovery, Anderson looked toward the JGI’s next decades of …
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An Enzyme Family that Helped Shape Nitrogen Metabolism on Our Planet
… plant, fungi and animal. This analysis led them to identify 2,938 putative AT  genes. Within the AT genes identified … species, each organism has a relatively small set of around 20 ATs. These ATs have maintained a small and relatively … kingdoms, with archaea having around 15, eubacteria around 25, and eukaryotes having slightly larger numbers due to …
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Waiting to Respire
… to gain and harness energy. As reported January 28, 2019 in Nature Communications , two research teams joined …
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