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Metabolic analysis of the soil microbe Dechloromonas aromatica str. RCB: indications of a surprisingly complex life-style and cryptic anaerobic pathways for aromatic degradation
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Party in the Rhizosphere
There’s a party in the soil, and microbes are the VIPs. They’re feasting on the …
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Extracting the Secrets of Secondary Metabolites
… to the lack of robust tools available for carrying CRISPR into microorganisms. CRAGE (Chassis-independent … a light into this “biological dark matter.”  It also offers CRISPR a point of entry. By using CRISPR to knock out …
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High-quality permanent draft genome sequence of Ensifer medicae strain WSM244, a microsymbiont isolated from Medicago polymorpha growing in alkaline soil
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Fine-scale evaluation of two standard 16S rRNA gene amplicon primer pairs for analysis of total prokaryotes and archaeal nitrifiers in differently managed soils
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Rex Malmstrom
… 199 Needham, D.M. et al. 2019. A distinct lineage of giant viruses brings a rhodopsin photosystem to unicellular marine … Couradeau, J.S. et al. 2019. Probing the active fraction of soil microbiomes using BONCAT-FACS.  Nature Comm 10(1) 1-10 Schulz, F. et al. 2018. Hidden diversity of soil giant viruses. Nature Comm . 9 (1), 4881 Tsementzi, D. …
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Katherine Louie
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Products
… small genes assembled to less than 5kb in length, cloned into vector of choice Glycerol stock of sequence verified … small genes assembled totaling 5-10kb in length, cloned into vector of choice Glycerol stock of sequence verified … ) 108/161 Viral Enrichment Draft quality assembly from virus pools/plaques obtained from a single host, many …
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Introducing New Members of the JGI User Executive Committee
Additionally, she noted, “I would also like to offer my insights in promoting diversity, equity and inclusion (DEI) … affect users and their access to technical capabilities JGI offers, as well as proposal review procedures and the …
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Learning to Look
Machine learning approach significantly expands inovirus diversity. To answer the question, “Where’s Waldo?” … inoviruses are in every major microbial habitat—including soil, water, and humans—around the world. By the numbers, … phages!” said Krupovic. “We can now start inquiring into their impact on microbial communities in the …
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Annual Genomics of Energy & Environment Meeting
… analysis, and new technology developments – that the JGI offers through proposal calls on a competitive, …
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Natural Prodcast Episode 4: Nancy Keller
I wanted to start, maybe just by asking you how did you get into the field of natural products?   NANCY: Yeah, that’s a … was finished with the Peace Corps, I decided I wanted to go into international agriculture. I had really changed my … metabolomics, and natural products in plants, fungi, and microorganisms. If you want to collaborate, let us know! …
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