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Boosting Small Molecule Production in Super “Soup”
… strains. (Blake Rasor) Think of cells as tiny factories: within their walls they have both the machinery to make … University describe a two-pronged approach that starts with engineered yeast cells but then moves out of the cell … products in industry.” From Cell to “Soup” The work started with yeast strains engineered by Alper’s team to convert the …
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Shattering Expectations: Novel Seed Dispersal Gene Found in Green Millet
… was green millet (Setaria viridis), a small model grass with a short lifecycle that uses a carbon fixation process … in Nature Biotechnology . Kellogg and her colleagues, along with researchers at the HudsonAlpha Institute for … a gene called Less Shattering 1 (SvLes1); gene editing studies led by co-first author Pu Huang confirmed that it …
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Mining Public Databases Yields Largest Map of Fungal Mitochondrial Genomes to Date
… genome data, unlocking new potential for AI-driven studies of energy metabolism. The Science Researchers … found inside mitochondria, the energy-producing structures within cells. This is the largest dataset of its kind ever … than 6,000 mitochondrial sequences previously unrecognized within existing public databases and recovered more than …
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Training the Next Generation of Talent
… JGI researcher, Zhong Wang, have adjunct faculty positions with the SNS, and Wang’s group was hosting another QSB … Visel, the program challenges UC Merced graduate students with individual projects at the DOE JGI that provide … on the genetic mechanisms of chemotaxis in the Arabidopsis microbiome, particularly, how bacteria can be driven toward …
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Katherine Louie
… over 10k samples/year, Dr. Louie and her team work with other JGI scientists in development of new, advanced … DNA-SIP for helping identify active micro-organisms within complex communities, and custom software for integrating metabolomics with genomic data (MAGI) for functional annotation and …
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Mapping the Earth’s Hidden Fungal Kingdom
… written in a yet-to-be-deciphered language. Researchers with the Department of Energy (DOE) Joint Genome Institute … Knowledge Gap The fungal kingdom presents researchers with a sampling puzzle of extraordinary complexity. Beyond … machine learning's potential in fungal genomics. Studies cited in the review show that machine learning …
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IMG Webinar Series
… of webinars related to our Integrated Microbial Genomics & Microbiomes portal. …
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Hiroshi Otani
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RECAP: Multi-Omic Journeys with 2023 JGI Annual Meeting Keynotes
… and recaps of all three keynote talks follow, starting with Bruce Hungate. Other videos of talks from the JGI … like poetry.” True to the introduction, Hungate spoke with real enthusiasm, even delight. He qualified his talk … field sampling and lab cultivation. “We need those lab studies to really understand what the organisms can do. And …
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Integrating Experimentation with Data
… Automated Laboratories: Integrating Experimentation with Data” was held at the Seattle Marriott Waterfront in Seattle, Washington.  Topics included:  Environmental Microbiomes Biodesign and Synthetic Biology AI/ML-enabled …
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Crops as Tough as World Cup Turf
… sorghum and other crops to grow well in worse conditions: with more heat, less water and less fertilizer. Grasses do …
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Engagement Webinar: Harnessing JGI’s Metabolomics Capabilities
… and Ben Bowen of the  JGI Metabolomics Program , along with Jenny Mortimer, Director of Plant Systems Biology at … or biological samples (like cell media or lake water) without doing a metabolite extraction? Or are these samples … a limit to identify molecules exchanged between plants and microbiomes during interactions? Is it reliable performing …
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