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Uncovering Novel Genomes from Earth’s Microbiomes
Large-scale comparative analysis leads to identification of biosynthetic gene clusters for novel secondary … environmental samples  sequenced by the JGI through the  Community Science Program and was already available on the …
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Tracing the Evolution of Shiitake Mushrooms
… often source their nutrients — the shii tree, a Japanese relative of the oak. These fungi are part of the … that brought together 39 researchers from eight different countries. Genome and transcriptome sequencing were enabled by the Community Science Program (CSP) at the U.S. Department of …
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David Goodstein
With a background in experimental and computational surface physics, Dr. Goodstein held positions at … the JGI's direct collaborators and the wider plant science community. Dr. Goodstein’s group also develops and maintains … plant genomics.      Nucleic Acids Research 40, D1178. Publications … Scientific Advisory Board member, InterMine …
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JGI@25: From Life at the Extremes to Editing Genomes
… 2022, we have revisited a number of notable achievements that showcase our collaborations and capabilities to enable … nature was using it to do something important.” Related Publications:  A scoutRNA Is Required for Some Type V … doi: 10.1038/s41467-017-01408-4. Tyson GW et al. Community structure and metabolism through reconstruction of …
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Pangenomics reveals alternative environmental lifestyles among chlamydiae
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The role of zinc in the adaptive evolution of polar phytoplankton
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What Happens Underground Influences Global Nutrient Cycles
DOE user facilities EMSL and JGI announce FY 2020 collaborative FICUS projects. Through the Facilities Integrating … for User Science (FICUS) program, two Department of Energy (DOE) Office of Science national user … temporal and spatial scales. EMSL leads the scientific community toward a predictive understanding of complex …
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A Plantiful Future: Xiaohan Yang
Can plants help humans attain a renewable energy future? Can they help lock away … using gene editing technology to conscientiously mix traits of different plant species will help us get there. …
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The molecular dimension of microbial species: 3. Comparative genomics of Synechococcus strains with different light responses and in situ diel transcription patterns of associated putative ecotypes in the Mushroom Spring microbial mat
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Rex Malmstrom
… is a Staff Scientist and leader of the Microscale Applications group. Before joining the JGI in 2010, he made the … et al. 2024.  Spatial co-transcriptomics reveals discrete stages of the arbuscular mycorrhizal symbiosis. Nature … dissertation in life sciences 2006 … Education … Selected Publications … Awards and Honors …
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Toward More Reproducible, Reusable Stable Isotope Probing Experiments
… by AI and Machine Learning — JGI researchers and collaborators work to create FAIR datasets to maximize returns on … ecosystems. These communities harbor tens of thousands of different organisms who all consume different compounds. … in activity as well; at any given time, many species in a community may be in ‘low power mode’, where they do very …
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Tanja Woyke
After studying the mechanism of action of antifungal natural products and their derivatives during her Ph.D. in … in 2004. The main object of her research was the symbiont community of a gutless oligochaete for which she deciphered … User Programs … Education … Awards and Service … Selected Publications …
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