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… In a special issue of mSystems , out May 14, 2019, JGI researchers are among the authors who offer … has advanced drastically, aided by genome assembly from metagenomes. This is a critical step toward better … integrated high-throughput sequencing and computational analysis that enable systems-based scientific approaches to …

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IMG/VR

… JGI's Simon Roux describes the structure and content of the IMG/VR v3 database (img.jgi.doe.gov/vr), the latest … of IMG database dedicated to viral genomes assembled from metagenomes. He also demonstrates briefly how to leverage … of IMG/VR to browse and search through the more than 2 million viral sequences available in IMG/VR v3. …

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Comparative Analysis of 126 Cyanobacterial Genomes Reveals Evidence of Functional Diversity Among Homologs of the Redox-Regulated CP12 Protein

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IMG-ABC: new features for bacterial secondary metabolism analysis and targeted biosynthetic gene cluster discovery in thousands of microbial genomes

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Identification of candidate genes in Arabidopsis and Populus cell wall biosynthesis using text-mining, co-expression network analysis and comparative genomics

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Viral community analysis in a marine oxygen minimum zone indicates increased potential for viral manipulation of microbial physiological state

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Correlation-based network analysis combined with machine learning techniques highlight the role of the GABA shunt in Brachypodium sylvaticum freezing tolerance

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Comparative genomic analysis of the gut bacterium Bifidobacterium longum reveals loci susceptible to deletion during pure culture growth