Results

Variation in Root Exudate Composition Influences Soil Microbiome Membership and Function
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Low-abundance populations distinguish microbiome performance in plant cell wall deconstruction
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Reference-free structural variant detection in microbiomes via long-read co-assembly graphs.
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Quantitative genetic-by-soil microbiome interactions in a perennial grass affect functional traits
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Bioinformatics Analysis Tools for Studying Microbiomes at the DOE Joint Genome Institute
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metagRoot: a comprehensive database of protein families associated with plant root microbiomes
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STREAMS guidelines: standards for technical reporting in environmental and host-associated microbiome studies
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Enlarging Windows into Understanding Gene Functions
… JGI innovates protocol revealing how genetic variations in … Technologies Group. In an article published November 25, 2021 in Nature Methods , JGI researchers led by co-first … the JGI’s Community Science Program (CSP) focuses on a fungal comparative ENCODE project known as FUNCODE. “We …
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Combating a Global Threat to a Clonal Crop: Banana Black Sigatoka Pathogen Pseudocercospora fijiensis (Synonym Mycosphaerella fijiensis) Genomes Reveal Clues for Disease Control
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Toward More Reproducible, Reusable Stable Isotope Probing Experiments
… with the prospect of meta-analyses boosted by AI and Machine Learning — JGI researchers and collaborators work to … version of a specific chemical, where ordinary Carbon-12 atoms are swapped for the heavier, non-radioactive isotope … with JGI Metagenome Program head Emiley Eloe-Fadrosh to host researchers in Berkeley.  Organizing this workshop, …
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The landscape of Chlamydomonas histone H3 lysine 4 methylation reveals both constant features and dynamic changes during the diurnal cycle
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The Exometabolome of Xylella fastidiosa in Contact with Paraburkholderia phytofirmans Supernatant Reveals Changes in Nicotinamide, Amino Acids, Biotin, and Plant Hormones
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