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A Revamped Amplification Method that Enables Nearly Complete Single-Cell Genomes
… With a new methodology, scientists are now getting more complete genomic results from single cells. The Science Studying the  genomes of microorganisms is incredibly useful for understanding the … like plasmids, the picture is far from complete.  In 2021 , scientists at St. Jude Children’s Research Hospital …
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First Monoploid Reference Sequence of Sugarcane
… . The Science Most species are diploids and have two sets of chromosomes, one from each parent. In contrast, many crops have multiple sets of chromosomes … as a reference. The final sugarcane sequence generated is 382 Mb; 25,316 protein-coding gene models were predicted with …
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Making a Lichen Together
… For the first time, a team analyzes the transcriptomes of a lichen fungus and alga to understand their partnership … The Science The humble lichen is a superorganism: one being that is actually comprised of two (or more) … Their partnership is widespread and cosmopolitan: more than 20,000 ascomycete species and hundreds of microalgae are …
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You Can Move, But You Can’t Hide
… to replicate themselves and spread from cell to cell. Two of the most common forms of MGEs are viruses and plasmids. They can be found in virtually all of Earth’s ecosystems. A software tool  … of Energy, Office of Science, Office of Biological and Environmental Research (BER) (89233218CNA000001 to L.A.N.L., …
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Waiting to Respire
… Genomes from uncultivated bacteria offers clues to ancestral bacteria’s energy sources. More … development of multicellular organisms. Not all bacterial lineages harnessed aerobic respiration when the Cyanobacteria … to gain and harness energy. As reported January 28, 2019 in Nature Communications , two research teams …
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JGI Earth Month: Wetlands Work in #TenHundredWords
… April marks both the 50th celebration of Earth Day on April 22, and DNA Day on April 25. As both Earth and DNA are close to our JGI hearts, we’re highlighting genomic science research that feels especially relevant … of DOE missions related to clean energy generation and environmental characterization and cleanup. The JGI provides …
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JGI Earth Month: The Unusual Metabolism That Helps Plants Withstand Drought
… In April 2020, we mark both the 50th celebration of Earth Day on …   ALISON:  Hey! I’m Alison Takemura at the US Department of Energy Joint Genome Institute, or JGI.  Two special days … of DOE missions related to clean energy generation and environmental characterization and cleanup. The JGI provides …
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Accelerating Metagenomics Discoveries with Deep Learning
… Berkeley National Laboratory (Berkeley Lab) and other institutions shared their works-in-progress with 86 … insights from metagenomic data. In deep learning, a branch of machine learning, data is passed through algorithms … magical; transform any length of amino acid sequence into a smaller, constant-length vector using deep learning. Vector …
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Panel Discussion: Launching & Sustaining Startups in Synthetic Biology
… Program presents… Eyes on the Prize – Launching & Sustaining Startups in Synthetic Biology Who’s Invited? All Berkeley Lab Employees and Affiliates. When: August 29th, 3:00 pm – 5:30 pm 3:00 pm – 4:15 pm: Panel discussion, … of DOE missions related to clean energy generation and environmental characterization and cleanup. The JGI provides …
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A Step Toward Controlling Soybean Rust
… The United States  is the world’s leading soybean producer , and soybeans are used to produce … causes Asian Soybean Rust (ASR) and is the major pathogen of soybean. Left uncontrolled, soybean rust could reduce … as 90 percent. As part of the DOE Joint Genome Institute’s  2016 Community Science Program portfolio , Sebastien …
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Triggering Morel Fruiting
… A collaborative team led by Hao Tan from the Sichuan Academy of Agricultural Sciences in China and involving Francis Martin from the Institut … assimilated carbon into the soil, reducing the amount of CO2 emissions from decaying leaves and woods into the … of DOE missions related to clean energy generation and environmental characterization and cleanup. The JGI provides …
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Mindfully Moving JGI
… JGI is in the process of shifting its operations from Walnut Creek … after countless generations of sequencing platforms (up to 120 sequencing machines at maximum) maintained by a workforce … of DOE missions related to clean energy generation and environmental characterization and cleanup. The JGI provides …
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